Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_K23
         (479 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   5.2  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   6.9  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              21   9.1  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   9.1  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 89  LRCGILEKNPKADDEQH 39
           L CG + +  K DDE H
Sbjct: 426 LICGSISEEQKFDDEAH 442


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 238 HDPPPPTKSYPRH 200
           H+ P PT S P+H
Sbjct: 59  HNSPSPTGSSPQH 71


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 170 VNCPFLKHFSMPRVRFCG 223
           V+CP L+ ++ P    CG
Sbjct: 65  VSCPVLRAYTCPICGACG 82


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = -2

Query: 283 SRGNQCRFKGLGRGGHDPPPPTKSYP 206
           + G+     GLG  GH P P     P
Sbjct: 268 NNGDMFCHTGLGHYGHHPDPGEVDLP 293


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,750
Number of Sequences: 438
Number of extensions: 2501
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)