Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_K22
(537 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 28 1.0
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ... 27 1.3
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 27 2.3
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 25 5.4
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 25 7.2
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch... 25 7.2
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom... 25 9.5
SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 25 9.5
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 25 9.5
SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces po... 25 9.5
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 27.9 bits (59), Expect = 1.0
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = -1
Query: 438 GEPSAFQRRPADTTTCIESSPQLQASVTFGDAPETRNSPSNVPELYSSI 292
GEP P T C + SP +V+ +T NSP+N + SI
Sbjct: 137 GEPP-LPNEPVPETNCHKESPLSDETVSETSKNDTSNSPTNENQAQPSI 184
>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 27.5 bits (58), Expect = 1.3
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = -1
Query: 405 DTTTCIESSPQLQASVTFGDAPETRNSP--SNVPE 307
DT S+PQLQ + +AP+ R +P S+VPE
Sbjct: 213 DTRKSTASTPQLQQTQAQANAPQQRINPETSSVPE 247
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 26.6 bits (56), Expect = 2.3
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Frame = -1
Query: 489 NLSIPSFTKSLPYIASKGEPSAFQ----RRPADTTTCIESSPQLQASVTFGDAPETRNSP 322
N+S+ S + S P +S +P AF + +DT++ + S+P L S+ P T P
Sbjct: 124 NISL-SQSSSSPATSSFSDPKAFSAGVPKFTSDTSSTVSSTPSLNHSLQNSMPPSTPTPP 182
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 25.4 bits (53), Expect = 5.4
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -1
Query: 435 EPSAFQRRPADTTTCIESSPQLQASVTFGDAPETRNSPSNVPELY 301
+ +A+QR+PAD + E Q +G+ + P+ V E Y
Sbjct: 31 DQNAYQRQPADAYSNEEFLDQADYDSMYGEGYNGYDYPTGVTESY 75
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 25.0 bits (52), Expect = 7.2
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Frame = -1
Query: 450 IASKGEPSAFQRRPADTTTCIESSPQLQASVTFGDAPETRNSPSNVPELYSSICCQAYPS 271
I S GE S+ + + SSP S T + + + NVP ++I + PS
Sbjct: 550 IISSGEHSSLPKNSKSRNVSVFSSPFNVPSFTVSSSDQVQKKKGNVP---NAIETDSSPS 606
Query: 270 AKW*TT-LIEAISVALSKNSQ 211
++ + A++++ SKN +
Sbjct: 607 DTISSSPTVRAVNLSPSKNQK 627
>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 25.0 bits (52), Expect = 7.2
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 411 PADTTTCIESSPQLQASVTFGDAPETRNSPSNVPELYSS 295
P + T+ ++SSPQ AS ++G N P +L S+
Sbjct: 266 PLNYTSSVDSSPQRMASDSYGRPSLHLNDPFPSVDLQSN 304
>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -1
Query: 465 KSLPYIASKGEPSAFQRRPADTTTCIESSPQL 370
+S ++ASKG P D + IE PQL
Sbjct: 255 RSSSHVASKGINKVVNINPGDVKSLIELFPQL 286
>SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 24.6 bits (51), Expect = 9.5
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -3
Query: 298 QHMLPGLPQCQMVDYADRSYLGCIEQELSARLVKICK 188
+++ GL QM+++ CI+ LSAR +KIC+
Sbjct: 7 KYLTNGLRSKQMINFL------CIQNILSARTLKICR 37
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 24.6 bits (51), Expect = 9.5
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -1
Query: 384 SSPQLQASVTFGDAPETRNSPSNVPELYSSICCQAYPSAKW*TTLIEAIS 235
+S + +A GDA R +++PE + + Q +PS K TT +S
Sbjct: 93 TSKKNEAGTESGDASVRRIYVTSIPEEHRHLPSQWFPSNKIRTTKYTPVS 142
>SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 325
Score = 24.6 bits (51), Expect = 9.5
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = -1
Query: 468 TKSLPYIASKGEPSAFQRRPADTTTCIESSPQLQASVTFGDAPETRNSPSNV 313
TK+ P + EPS FQ+ + +C + + + T+ A + +PS V
Sbjct: 4 TKTQPSPEREREPSFFQKLFGNLCSCFQDA-SIDEKPTYTPAKPVKKAPSVV 54
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,202,944
Number of Sequences: 5004
Number of extensions: 43322
Number of successful extensions: 106
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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