Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_K22
         (537 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0704 - 26953474-26953643,26953770-26953801,26953915-269540...    31   0.58 
09_04_0041 - 14051870-14052430,14052509-14052562                       29   1.8  
07_03_0329 + 16840051-16840917,16840999-16841342,16841444-168415...    28   4.1  
07_03_1697 - 28795521-28797328,28797430-28797550                       27   7.2  

>03_05_0704 -
           26953474-26953643,26953770-26953801,26953915-26954009,
           26954107-26954180,26954283-26954412,26954522-26954585,
           26954660-26954722,26954795-26954937,26955386-26955523,
           26955610-26955731,26955805-26955976,26956559-26956630,
           26956753-26956887,26956987-26957103,26957184-26957316,
           26957455-26957561,26958060-26958077,26958235-26958379,
           26958472-26958671,26960744-26961421
          Length = 935

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = +2

Query: 323 GEFRVSGASPNVTLACSCGLLSMQVVVSAGLR*KADGSPLEAI*GSDFVKEGMERLA 493
           G   V   +P V +   CG +  ++VVS G      GS L A  G+D VK    ++A
Sbjct: 116 GGVGVPAPAPAVAVGALCGEMKGKMVVSGGAPPAGQGSSLAAAQGTDNVKREPSQVA 172


>09_04_0041 - 14051870-14052430,14052509-14052562
          Length = 204

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = -2

Query: 377 HNYKPASHSGMPPKRGIPRQMFQNCTAAYAARPTPVP 267
           +NY       +PPKRG  R       AA AA P P P
Sbjct: 76  NNYFRGDDPSLPPKRGRGRPPKPKDAAAAAAAPAPAP 112


>07_03_0329 +
           16840051-16840917,16840999-16841342,16841444-16841574,
           16841671-16841792,16841877-16841983,16842104-16842236,
           16842342-16842458,16842560-16842667,16842716-16842742,
           16842759-16842830,16843462-16843584,16843671-16843833,
           16844140-16844264,16844355-16844489,16844574-16844677,
           16844772-16844834,16844930-16844993,16845186-16845318,
           16845414-16845487,16845603-16845697,16845799-16845830,
           16846201-16846355
          Length = 1097

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 343 GIPECDAGL*LWATFYASCRISRPAL 420
           G  E D G+  W  FY SCR+++  L
Sbjct: 418 GSRELDKGIFAWKGFYQSCRVTQQGL 443


>07_03_1697 - 28795521-28797328,28797430-28797550
          Length = 642

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 383 VAHNYKPASHSGMPPKRGIPRQMFQNCTA 297
           +A   KP   +  PP RG+P + ++ C A
Sbjct: 323 IARAGKPGQLAAPPPPRGLPSRRYRRCRA 351


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,986,302
Number of Sequences: 37544
Number of extensions: 316388
Number of successful extensions: 818
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)