Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_K22
         (537 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    24   0.86 
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    24   0.86 
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   2.6  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   3.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   6.0  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   8.0  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   8.0  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 24.2 bits (50), Expect = 0.86
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 347 SPNVTLACSCGLLSMQVVVSAGLR*KADGSP 439
           +PN  ++  C  L++ V     LR K DGSP
Sbjct: 117 NPNTNISEDCLYLNIWVPQKYRLRHKGDGSP 147


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 24.2 bits (50), Expect = 0.86
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 347 SPNVTLACSCGLLSMQVVVSAGLR*KADGSP 439
           +PN  ++  C  L++ V     LR K DGSP
Sbjct: 117 NPNTNISEDCLYLNIWVPQKYRLRHKGDGSP 147


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 301 QQHMLPGLPQCQMVDYADRS 242
           + H    LP+CQ+ +  DRS
Sbjct: 70  RSHRFKSLPRCQLSNKRDRS 89


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 457 QRLRERRDGKIGGASL 504
           QRLR+  D K GG +L
Sbjct: 492 QRLRKELDSKTGGVNL 507


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = -2

Query: 362 ASHSGMPPKRGIPRQMFQNCTAAYAARPTPVPNGRLR 252
           AS +G  P          N TAA     T +P  RLR
Sbjct: 231 ASATGTGPATPSAVVATSNATAAMTTGTTTIPTRRLR 267



 Score = 21.4 bits (43), Expect = 6.0
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 374 NYKPASHSGMPPKRGIP 324
           +YKPAS  G   K G P
Sbjct: 886 SYKPASTPGCSSKNGEP 902


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 73  YKMDNPNAFGYNNNS 117
           YK +  N + YNNN+
Sbjct: 96  YKYNYNNKYNYNNNN 110


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 73  YKMDNPNAFGYNNNS 117
           Y  +N N + YNNN+
Sbjct: 96  YNNNNYNNYNYNNNN 110


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,156
Number of Sequences: 438
Number of extensions: 3094
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)