Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_K20
         (432 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    29   0.23 
SPBC409.09c |mis13|cnl1|kinetochore protein Mis13|Schizosaccharo...    27   1.2  
SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans...    26   2.8  
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po...    26   2.8  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    25   3.8  
SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    25   3.8  
SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|...    25   3.8  
SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|...    25   5.0  
SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41 |Schizosacch...    25   6.6  
SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase catal...    25   6.6  
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran...    25   6.6  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    24   8.7  

>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 29.5 bits (63), Expect = 0.23
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 227 SLTYIVIFANN-NNHSCSMIYDGFKINNYINIFLSRVCNH 343
           SL Y+ ++A N N+HS   +++ F+  +Y    +S   NH
Sbjct: 467 SLCYLCLYAQNLNSHSSQSLFELFQSASYPGFLISNDVNH 506


>SPBC409.09c |mis13|cnl1|kinetochore protein
           Mis13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 329

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 184 AHRSRLLSKLKYFTTIQLINQLKTISFSAS 95
           AHR  LLS  KY  T+ L+  L   S+ +S
Sbjct: 295 AHRKSLLSFSKYVDTMNLLRLLSEASYKSS 324


>SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -3

Query: 301 YFKTIIYHRTRMIIIVSENDDVSKGRGGAT 212
           Y+  +I+HR     ++   D    GRGG +
Sbjct: 37  YYDGVIFHRVIPDFVIQGGDPTGTGRGGTS 66


>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 594

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 92 FITHVHHIKHIISLYYFSVCII 27
          F+ H+H I H+ SLY  S+C +
Sbjct: 36 FLVHIHLIPHLNSLY--SICFL 55


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = +3

Query: 66  FYMMNVCNEWDAEKEIVFS*LINCIVVKYLSFESRRERCAASRLNYTPAVAPPRP 230
           F   N C   D +K  VFS +   I     +  + R   A  RL+ TP+  P  P
Sbjct: 371 FLSFNECASQD-KKNCVFSRVTKYIKAARRASTANRVSVAKDRLSLTPSSTPSTP 424


>SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -3

Query: 352 SIIMVTHSRKKNINVIIYFKTIIYH-RTRMIIIVSENDDVSK 230
           S+I  T +  KN+N+ I  KT++     + +I+   N D SK
Sbjct: 310 SLITYTENLFKNLNIKIMTKTVVKDVNEKNLIVQKTNPDGSK 351


>SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 521

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 305 NYINIFLSRVCNHYYTILR 361
           N+INI LS +C H  TI++
Sbjct: 422 NWINILLSYICYHRATIVQ 440


>SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 270

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 233 TYIVIFANNNNHSCSMIYDGFKINNYINIFLSRVCNHY 346
           TY+ +F  +NN   S I      N  + +FL+  CN Y
Sbjct: 92  TYLPLFKKSNNAYPSKIAFNPISNTTLVLFLTECCNIY 129


>SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +2

Query: 257 NNNHSCSMIYD-GFKINNYINIFLSRVCNHYYTILR 361
           +++H   M Y    + N Y+     + C HYY IL+
Sbjct: 338 SSDHLNQMTYVFAIEANGYVKDVTRKYCLHYYKILK 373


>SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase
           catalytic subunit Dpm1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = -3

Query: 355 YSIIMVTHSRKKNINVIIYFKTIIYHRTRMIIIVSENDDVS 233
           YS+++ T++ +KN+ +I Y     + + ++   +   DD S
Sbjct: 4   YSVLLPTYNERKNLPIITYLIAKTFDQEKLDWEIVIIDDAS 44


>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 516

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -3

Query: 301 YFKTIIYHRTRMIIIVSENDDVSKGRGG 218
           Y++  I+HR     ++   D    GRGG
Sbjct: 311 YYRNTIFHRNIARFMIQGGDPSGTGRGG 338


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 125 STKNYFFFCIPFITHVHHIKHIISL 51
           ST N+F     FI H H +  I+ L
Sbjct: 46  STDNHFTLIQTFIAHKHSVSSIVCL 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,668,999
Number of Sequences: 5004
Number of extensions: 30584
Number of successful extensions: 80
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)