Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_K19
         (531 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    27   2.3  
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar...    27   2.3  
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha...    27   2.3  
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce...    26   4.0  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    25   5.3  
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    25   7.0  
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    25   9.3  
SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit Cut9|...    25   9.3  

>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -1

Query: 186 SSIDILLKNISNSYNIKLLCKYLFFLKTNV 97
           +++ IL  ++SN +N ++LC   FF K N+
Sbjct: 454 TNMPILRDSVSNVFNNQVLCSSNFFQKDNL 483


>SPBC19C7.08c |||leucine carboxyl
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 681

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +3

Query: 168 TKCRWNSGL*INTYNSLSVCLEHFRVAF*RGCCLFVTFMCAIGIYDRATSQL 323
           TK   + G  +N  N L  CLE + + +     LF++ + A+ +  +A+ +L
Sbjct: 156 TKNYHSFGCNLNLLNQLESCLEKYGIDYCNDAILFISEVAAVYMPRQASEKL 207


>SPAPJ696.01c |vps17||retromer complex subunit
           Vps17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 549

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 12/57 (21%), Positives = 29/57 (50%)
 Frame = +2

Query: 305 SSDIATLVDGNCVAPLDEIVISHLLCIKALYMQDYLEAYSHQSACVASVVKLLQAQK 475
           S  + TL D  C A  +  V+  +L  + + M+D + + +  ++ +++  +L  + K
Sbjct: 320 SKQLVTLADSLCYASDNAFVVKEILSNRHILMRDLISSKNQTNSYLSAANRLQDSPK 376


>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 415

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +1

Query: 52  LYSTNLNMYYDVKLNDVRF*KEKIFAQ*FYVIRVTYIF 165
           +  TN++ +Y++ L  V   + K  +Q  Y++R   +F
Sbjct: 92  ILDTNIDFFYEIMLRQVLLKRPKEESQQIYLLRPAMVF 129


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1315

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 12/47 (25%), Positives = 27/47 (57%)
 Frame = +2

Query: 374  LLCIKALYMQDYLEAYSHQSACVASVVKLLQAQKEENWTLPLIVHSL 514
            L+ I + Y+Q YLE  S +   +A ++    A++E+ +   ++++ L
Sbjct: 974  LIEIDSPYIQSYLERNSTKDMKIADLLWQYYAKREQYYQASIVLYDL 1020


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1225

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 404  DYLEAYSHQSACVASVVKLLQAQKEENWTLPL 499
            D+     H  +CV    KLLQ Q++ N+ +PL
Sbjct: 1109 DFGNKDDHLGSCVIDC-KLLQQQQQTNYEIPL 1139


>SPAC31G5.15 |||phosphatidylserine decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 980

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +2

Query: 377 LCIKALYMQDYLEAYSHQSACVASVVKL 460
           +CI  L  QDY   +S  + C+  + K+
Sbjct: 824 ICISRLAPQDYHRFHSPVNGCIGPITKI 851


>SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit
           Cut9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
 Frame = +2

Query: 317 ATLVDGNCVAPLDEIVISHLLCIKA---LYMQDYLEAYSHQSACVASVVKLLQAQK 475
           A +VD  C    D++V +HLL       L ++     YS + A     + +L+  K
Sbjct: 226 ALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNK 281


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,131,673
Number of Sequences: 5004
Number of extensions: 40446
Number of successful extensions: 96
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)