Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_K19
         (531 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40419-7|AAL02444.1|  413|Caenorhabditis elegans Hypothetical pr...    34   0.073
Z81486-8|CAB03990.2|  338|Caenorhabditis elegans Hypothetical pr...    29   1.6  
U80931-2|AAB37999.1|  467|Caenorhabditis elegans Hypothetical pr...    29   1.6  
U80931-3|AAO91701.1|  160|Caenorhabditis elegans Hypothetical pr...    28   3.6  
Z67995-6|CAA91946.1| 2692|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z67737-7|CAA91543.1| 2692|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>U40419-7|AAL02444.1|  413|Caenorhabditis elegans Hypothetical
           protein C27F2.10 protein.
          Length = 413

 Score = 33.9 bits (74), Expect = 0.073
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = +2

Query: 353 DEIVISHLLCIKALYM-QDYLEAYSHQSACVASVVK-LLQAQKEENWTLPL 499
           DEIV  HL  +  +++ QD + A S Q   +    K +LQ +K+ENW LP+
Sbjct: 66  DEIVCLHLHVLYNIHVAQDLITAQSTQIQIIQLFNKEILQKRKDENWFLPI 116


>Z81486-8|CAB03990.2|  338|Caenorhabditis elegans Hypothetical
           protein C53A5.10 protein.
          Length = 338

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 207 YNSLSVCLEHFRVAF*RGCCLFVTFMCAIGIYDRAT 314
           YN++ V   +F +     CCL++ F CA+G   + T
Sbjct: 198 YNNIPVLFNNFLIVI-TTCCLYMFFCCALGAKTKNT 232


>U80931-2|AAB37999.1|  467|Caenorhabditis elegans Hypothetical
           protein T01B11.2a protein.
          Length = 467

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 19/67 (28%), Positives = 29/67 (43%)
 Frame = +2

Query: 173 MSMELGTLNQYIQFVERMFRTFQGSILARLLSLRDVHVCNRNLRSSDIATLVDGNCVAPL 352
           +S +L T    ++FV          IL+ L  L  V  CN    ++D+A  +  +     
Sbjct: 90  ISKQLATSTCNVRFVSTQLTDCAEQILSTLPGLDTVLFCNSGSEANDLALRLARDYTKHK 149

Query: 353 DEIVISH 373
           D IVI H
Sbjct: 150 DAIVIEH 156


>U80931-3|AAO91701.1|  160|Caenorhabditis elegans Hypothetical
           protein T01B11.2b protein.
          Length = 160

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 19/69 (27%), Positives = 30/69 (43%)
 Frame = +2

Query: 173 MSMELGTLNQYIQFVERMFRTFQGSILARLLSLRDVHVCNRNLRSSDIATLVDGNCVAPL 352
           +S +L T    ++FV          IL+ L  L  V  CN    ++D+A  +  +     
Sbjct: 90  ISKQLATSTCNVRFVSTQLTDCAEQILSTLPGLDTVLFCNSGSEANDLALRLARDYTKHK 149

Query: 353 DEIVISHLL 379
           D IVI  L+
Sbjct: 150 DAIVIEQLV 158


>Z67995-6|CAA91946.1| 2692|Caenorhabditis elegans Hypothetical
           protein T01H10.8 protein.
          Length = 2692

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +2

Query: 335 NCVAPLDEIVISHLLCIKALYMQDYLEAYSHQSACVASVVKLLQ 466
           NC+   D  +  HL C+  L   D + AY+       SV ++L+
Sbjct: 576 NCIQ--DHFIQCHLTCLSILTFCDQMHAYAPSKMWFESVSRILE 617


>Z67737-7|CAA91543.1| 2692|Caenorhabditis elegans Hypothetical
           protein T01H10.8 protein.
          Length = 2692

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +2

Query: 335 NCVAPLDEIVISHLLCIKALYMQDYLEAYSHQSACVASVVKLLQ 466
           NC+   D  +  HL C+  L   D + AY+       SV ++L+
Sbjct: 576 NCIQ--DHFIQCHLTCLSILTFCDQMHAYAPSKMWFESVSRILE 617


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,720,254
Number of Sequences: 27780
Number of extensions: 228082
Number of successful extensions: 493
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)