Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_K19
         (531 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   2.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.6  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.9  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.9  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.9  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.9  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.9  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.9  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = +1

Query: 13  FFGNIITCI*I*KLYS--TNLNMY-YDVKLNDVRF 108
           F GNIITCI I +  S  T  N Y +++ ++D+ F
Sbjct: 48  FVGNIITCIVIWRNPSMQTPTNYYLFNLAVSDLLF 82


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 99  RSFLKRKDICTVVLCYKSYL 158
           R   KRK++   ++C+ SYL
Sbjct: 409 RLLRKRKELFIAIVCFVSYL 428


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 99  RSFLKRKDICTVVLCYKSYL 158
           R   KRK++   ++C+ SYL
Sbjct: 462 RLLRKRKELFIAIVCFVSYL 481


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 512 NCVQ*VVESSSPLFVLVII 456
           NC+  +V SS  L VLV+I
Sbjct: 262 NCIMFMVASSVVLTVLVLI 280


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 512 NCVQ*VVESSSPLFVLVII 456
           NC+  +V SS  L VLV+I
Sbjct: 262 NCIMFMVASSVVLTVLVLI 280


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 512 NCVQ*VVESSSPLFVLVII 456
           NC+  +V SS  L VLV+I
Sbjct: 262 NCIMFMVASSVVLTVLVLI 280


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 512 NCVQ*VVESSSPLFVLVII 456
           NC+  +V SS  L VLV+I
Sbjct: 262 NCIMFMVASSVVLTVLVLI 280


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 512 NCVQ*VVESSSPLFVLVII 456
           NC+  +V SS  L VLV+I
Sbjct: 262 NCIMFMVASSVVLTVLVLI 280


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 512 NCVQ*VVESSSPLFVLVII 456
           NC+  +V SS  L VLV+I
Sbjct: 262 NCIMFMVASSVVLTVLVLI 280


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,663
Number of Sequences: 438
Number of extensions: 2670
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14968302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)