Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_K18
(460 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0223 - 19467303-19467326,19467485-19467601,19468143-194682... 33 0.15
02_01_0473 - 3403547-3404241,3404455-3404983,3405299-3405477,340... 29 2.4
05_03_0496 + 14706959-14707020,14707173-14707538,14708070-147082... 28 3.1
01_06_1454 + 37498513-37499154 28 4.2
05_05_0173 + 22956927-22958615 27 5.5
03_06_0358 + 33366265-33366447,33367371-33367468,33367910-333689... 27 5.5
02_02_0221 + 8006708-8006950,8007049-8007252,8007559-8007750,800... 27 5.5
12_01_0085 - 689489-689935 27 7.3
02_04_0226 + 21073967-21074179,21074711-21074832,21074926-210753... 27 7.3
05_04_0451 - 21365617-21366279 27 9.6
01_06_1440 + 37378121-37378958,37379344-37379494,37379567-373799... 27 9.6
01_06_1285 - 35995943-35996087,35996909-35997697,35997802-359978... 27 9.6
>01_05_0223 -
19467303-19467326,19467485-19467601,19468143-19468256,
19468575-19468697,19468846-19468935,19469765-19469890,
19471942-19471995,19472068-19472142,19472222-19472329,
19472556-19472627,19473375-19473545
Length = 357
Score = 32.7 bits (71), Expect = 0.15
Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Frame = -2
Query: 459 ECVLDDVLAAHFEPEEGHRRRDADHRVQQRDAPLRVHADAVLVVQPQGLR------RRRQ 298
E LDDV AA +PEE DADH + PL ++A L++ QGL RR+
Sbjct: 259 EVNLDDVNAAFDDPEE-----DADHTLDDEAGPLTLNA-FDLIILSQGLNLAALFDRRQD 312
Query: 297 YERVLQERKL 268
Y++ LQ R L
Sbjct: 313 YDK-LQNRFL 321
>02_01_0473 -
3403547-3404241,3404455-3404983,3405299-3405477,
3405868-3405952,3406136-3406482,3407061-3407159,
3408135-3408636
Length = 811
Score = 28.7 bits (61), Expect = 2.4
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = -2
Query: 414 EGHRRRDADHRVQQRDAPLRVHADAVLVVQPQGLRR 307
+G+R RD R ++R+ R+H DAVL + GLRR
Sbjct: 117 KGNRTRDGKGR-EEREG--RMHLDAVLAARRPGLRR 149
>05_03_0496 +
14706959-14707020,14707173-14707538,14708070-14708209,
14708319-14708566,14708814-14708946,14709096-14709159,
14709284-14709380,14709505-14709607,14709702-14709838,
14710063-14710152,14710240-14710401
Length = 533
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = -2
Query: 444 DVLAAHFEPEEGHRRRDADHRVQQRDAPLR-VHADAVLVVQPQGLRR 307
D A F P GHRRR HR + D P + D + + P+ R+
Sbjct: 144 DRSAPPFPPRAGHRRRPRLHR-HRHDLPFHALRLDTMAAISPEHRRQ 189
>01_06_1454 + 37498513-37499154
Length = 213
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +2
Query: 323 GCTTRTASACTRSGASRCCTRWSASRRRCP 412
G R C +RC RW A+R+ CP
Sbjct: 155 GHRVRVLPRCGHGFHARCIDRWLAARQTCP 184
>05_05_0173 + 22956927-22958615
Length = 562
Score = 27.5 bits (58), Expect = 5.5
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +1
Query: 70 LYPPTSLKSSKTSQPDDPLAVELDINVLDARKPYLPFEEFYNEPLSDTIEMDIDFG 237
L+PP S ++ +P PL D + +A PY+P E + + + D++FG
Sbjct: 64 LHPPYSPPPAELVRPPTPLPEPYDPSAPEAHPPYVPPPVPPPEAIPELAD-DLEFG 118
>03_06_0358 +
33366265-33366447,33367371-33367468,33367910-33368945,
33369042-33369554,33370456-33370644,33370715-33370848,
33371196-33371358
Length = 771
Score = 27.5 bits (58), Expect = 5.5
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Frame = -2
Query: 450 LDDVLAAHFEPEEGHRRRDADHRVQQRDAPLRVHADAVLVVQPQGLR--RRRQYERVLQE 277
L VL F+P + R+++ A L D VL P G+R R +L +
Sbjct: 365 LSSVLMKQFKPSVEQALESSLRRIEESTAALAAADDWVLTYPPSGIRTFARSSASSLLLQ 424
Query: 276 RKLLTSAY 253
KL S +
Sbjct: 425 PKLSNSGH 432
>02_02_0221 +
8006708-8006950,8007049-8007252,8007559-8007750,
8007860-8008098,8009756-8009851,8009966-8010058,
8011481-8011561,8012432-8012518,8012904-8013033,
8013223-8013528,8013749-8013772,8014162-8014240,
8014572-8014708,8015427-8015477
Length = 653
Score = 27.5 bits (58), Expect = 5.5
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +1
Query: 163 KPYLPFEEFYNEPLSDTIEMDIDFGNYKTEISRGKKFAFLKYPFVLTAATKSLGLYY 333
KP LPFEE++ E T+ + G Y + +KF+ + ++T + LYY
Sbjct: 530 KPLLPFEEWHIEFSEITVGTRVGIGKYMGSL---EKFSVPPHLSLVTEYMEMGSLYY 583
>12_01_0085 - 689489-689935
Length = 148
Score = 27.1 bits (57), Expect = 7.3
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +2
Query: 338 TASACTRSGASRCCTRWSASRRRCP 412
T +AC C RW A+R CP
Sbjct: 89 TLAACRHEFHKECIYRWLANRNTCP 113
>02_04_0226 +
21073967-21074179,21074711-21074832,21074926-21075370,
21075453-21075559,21075656-21076463,21076691-21077128,
21077349-21077537,21077616-21077843,21077943-21078140,
21078304-21078379,21078452-21078593,21078749-21079238
Length = 1151
Score = 27.1 bits (57), Expect = 7.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 313 KSLGLYYENRIRMYSERRVSLLHA 384
+ LG+ E+R+R E+R L+HA
Sbjct: 146 EELGMKVESRVRQAEEKRTQLMHA 169
>05_04_0451 - 21365617-21366279
Length = 220
Score = 26.6 bits (56), Expect = 9.6
Identities = 10/26 (38%), Positives = 11/26 (42%)
Frame = +2
Query: 335 RTASACTRSGASRCCTRWSASRRRCP 412
R C RC RW A+R CP
Sbjct: 159 RVLPGCNHGFHDRCIDRWLAARPTCP 184
>01_06_1440 +
37378121-37378958,37379344-37379494,37379567-37379936,
37380021-37380431,37380522-37380820,37380897-37381155,
37381248-37381497,37381744-37381875,37381936-37382208,
37383023-37383267
Length = 1075
Score = 26.6 bits (56), Expect = 9.6
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Frame = -1
Query: 352 TCGCGSRSTAP---GTSSPPSVRTGTSGTQTS 266
T G G R TAP G P S GT+G TS
Sbjct: 846 TVGAGPRPTAPISHGPRLPSSAFAGTTGASTS 877
>01_06_1285 -
35995943-35996087,35996909-35997697,35997802-35997871,
35997989-35998220
Length = 411
Score = 26.6 bits (56), Expect = 9.6
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Frame = -1
Query: 352 TCGCGSRSTAPGTSSPPSVRTGT--------SGTQTSYLCLFPSYNYQN 230
+C GS+ TA TSSPP GT +G TS LC + Y ++
Sbjct: 149 SCSSGSQETA--TSSPPGWENGTGEARQKKGAGINTSELCEYRVYKAED 195
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,752,852
Number of Sequences: 37544
Number of extensions: 214340
Number of successful extensions: 831
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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