Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_K17
         (524 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   1.7  
SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces po...    26   3.0  
SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyce...    26   4.0  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    25   5.2  
SPAC12G12.08 |mrpl6||mitochondrial ribosomal protein subunit L16...    25   5.2  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    25   6.9  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.1  
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    25   9.1  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    25   9.1  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 23/78 (29%), Positives = 27/78 (34%)
 Frame = -3

Query: 513 PPPPXXXXXXXXXXXXXXXRNTPPCLVPCSARSVPRDRPASCLSRNGSPSQRLPPPDRLR 334
           PPPP               R+ PP   P SA S  R  P    SR  S     PP    R
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGR 398

Query: 333 STPHATRLRSPNHLTLSP 280
           S P    L + +  +  P
Sbjct: 399 SAPALPPLGNASRTSTPP 416


>SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 451

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 9/83 (10%)
 Frame = -1

Query: 518 PARLRRLHVQSERAVAVLVQLAIRHLVWSRAVRGQFPGTGQPRV-----YPGTDLPPN-- 360
           P+ L R H Q+  +  V    A+ HL   R++       G   V      P T   PN  
Sbjct: 62  PSALTRAHSQNPNSSLVNNSSAVSHLTKQRSLNDLHELNGPKHVAKNGLIPLTQRKPNCV 121

Query: 359 --DSPLQTDSGAHHTRRVSALRT 297
             D+P+  DS A +    SAL T
Sbjct: 122 WDDAPVDNDSTAGNLDSDSALPT 144


>SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 418

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 92  RWQCRWTRCSGSFPVCTR 145
           RW+CRW    G+   C R
Sbjct: 369 RWRCRWCNVLGTGTFCVR 386


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 514 PASAGFTFRVNVPSPCSYSSQYATLFGPVQCAVSSPGPASLVS 386
           P++  +T  +   S   YSS   T+   V   +SS   ASL+S
Sbjct: 586 PSNTSYTSSLIPSSSTDYSSSLITVCSNVTSEISSTSLASLIS 628


>SPAC12G12.08 |mrpl6||mitochondrial ribosomal protein subunit
           L16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 213

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -3

Query: 327 PHAT-RLRSPNHLTLSPSADIL 265
           PH T  +R PN+L LS + DIL
Sbjct: 59  PHGTLNMRFPNYLNLSKTNDIL 80


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -1

Query: 431 RAVRGQFPGTGQPRVYPGTDLPPNDSPLQTDS--GAHHTRRVS 309
           R V+G   GT +P V+    +PP   P Q  S  G+   R+VS
Sbjct: 47  RTVKGCKNGTSEPNVFKARPIPP---PRQVSSTIGSSTGRKVS 86


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1038

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -3

Query: 390  CLSRNGSPSQRLPPPDRLRSTPHATRL-RSPNHLTLSPS 277
            CL ++G   +  PPP R       T+L +     +LSP+
Sbjct: 935  CLEKDGEAPKEAPPPPRSEPVSTTTKLAKRITQPSLSPA 973


>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 9   GNSAADRVTLAGRGL 53
           G S  DR+T+AG+G+
Sbjct: 402 GTSTGDRITMAGKGI 416


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 375 GSPSQRLPPPDRLRSTPHAT 316
           G P  +LPPP + +S P+ T
Sbjct: 105 GGPPSQLPPPPQPQSHPNVT 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,977,187
Number of Sequences: 5004
Number of extensions: 37731
Number of successful extensions: 117
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)