Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_K17
(524 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769... 34 0.061
05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28... 33 0.19
07_03_1254 - 25219804-25220295 30 0.99
01_06_1330 - 36361275-36361448,36361778-36361973,36362248-363623... 30 0.99
04_02_0046 - 9181351-9181791,9182143-9182439 30 1.3
02_05_0225 + 26951993-26952165,26953169-26953567,26953644-269537... 30 1.3
01_06_1210 + 35430143-35430796,35430912-35431004,35431397-354315... 29 2.3
10_02_0195 + 6578384-6578629,6578710-6579300,6586302-6587512,658... 29 3.0
01_05_0638 - 23871424-23871974,23872154-23872325 28 4.0
09_04_0110 + 14720800-14720932,14721015-14721144,14721231-147219... 28 5.3
04_04_1090 - 30764340-30764704,30765092-30765204,30765414-307656... 28 5.3
10_08_0666 - 19691985-19692216,19692327-19692404,19692508-196928... 27 7.0
05_06_0277 + 26885621-26886064,26886148-26886317,26887038-268879... 27 7.0
05_05_0070 + 22148595-22148907,22148988-22149104,22149196-221493... 27 7.0
05_04_0337 - 20372378-20373094,20373320-20373379,20373992-203742... 27 7.0
04_04_1318 + 32608441-32608833,32608953-32608997,32609092-326091... 27 7.0
02_05_1081 + 33971950-33972606 27 7.0
03_01_0404 + 3138624-3140096 27 9.2
02_03_0220 + 16545571-16545573,16545717-16545818,16545980-165460... 27 9.2
>12_01_0831 -
7688342-7688772,7690678-7692610,7693142-7693915,
7694019-7694142,7696084-7696189,7696346-7696532
Length = 1184
Score = 34.3 bits (75), Expect = 0.061
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = -3
Query: 444 PCLVPCSARSVPRDRPASCLSRNGSPSQRLPP-PDRLRSTPHATRLRSPNHLTLSPSADI 268
P + S RS+ R RP+S SR+ P PP P STP + + +P + SP++ +
Sbjct: 153 PIRLSPSPRSMSRTRPSSAASRSSPPFALQPPTPSWRPSTPPSAKTLTPPRRSPSPASTL 212
>05_01_0041 +
281427-281549,281671-281730,281822-281868,282013-282089,
285368-285440,286193-286281,286665-286711,286805-286885,
287011-287179,287381-287600,287679-287744,288194-288310,
288591-288628,288935-289032
Length = 434
Score = 32.7 bits (71), Expect = 0.19
Identities = 26/56 (46%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = -3
Query: 429 CSARSVP-RDRPA-SCLSRNGSPSQRLPPPDRLRS-TPHATRLRSPNHLTLSPSAD 271
C S P R R A S + G+PS+R P R RS +P RLRSP H LSP D
Sbjct: 282 CRPDSPPIRRRTAPSPIRHGGTPSRRPGSPIRRRSPSPPPRRLRSPRH--LSPRRD 335
Score = 29.1 bits (62), Expect = 2.3
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Frame = -3
Query: 408 RDRPASCLSRNGSPSQRLPPPDRLRSTPHAT-----RLRSPNHLTL-SPSADI 268
RDR + R+ P +RL PP R+ S P R RSP H + SPS I
Sbjct: 334 RDRGSPIRRRSPLPRRRLTPPRRMWSPPRRPQSLRHRSRSPIHRPIRSPSRSI 386
>07_03_1254 - 25219804-25220295
Length = 163
Score = 30.3 bits (65), Expect = 0.99
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -3
Query: 381 RNGSPSQRLPPPDRLRSTPHATRLRSPNHLTLSPSAD 271
R GSP LPPP ++RSTP + R P T S D
Sbjct: 106 RLGSPP--LPPPRKVRSTPSSPRRDVPTSATAIVSVD 140
>01_06_1330 -
36361275-36361448,36361778-36361973,36362248-36362325,
36362685-36362807,36363206-36363463,36363914-36364073,
36364702-36364812,36365159-36365429,36365514-36365663,
36366383-36367090
Length = 742
Score = 30.3 bits (65), Expect = 0.99
Identities = 18/45 (40%), Positives = 20/45 (44%)
Frame = -3
Query: 444 PCLVPCSARSVPRDRPASCLSRNGSPSQRLPPPDRLRSTPHATRL 310
P L+P A S P PAS + P PPP LR P RL
Sbjct: 78 PSLIPTPAASTP---PASPTANASPPPSLPPPPPPLRPPPPPARL 119
>04_02_0046 - 9181351-9181791,9182143-9182439
Length = 245
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/23 (60%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = -3
Query: 354 PPPDRLRSTPH-ATRLRSPNHLT 289
P P RLRS PH A R SP H+T
Sbjct: 194 PNPSRLRSAPHSAVRSLSPRHVT 216
>02_05_0225 + 26951993-26952165,26953169-26953567,26953644-26953797,
26954069-26954240,26954494-26954567,26954667-26954763,
26954888-26955000,26955168-26955283,26955960-26956017,
26956512-26956664,26957377-26957460,26957579-26957734,
26958401-26958469,26959212-26959300,26959398-26959560,
26959740-26959874,26959950-26960055,26960143-26960237,
26960508-26960753,26961567-26961635,26961772-26961837,
26961838-26961983,26962348-26962449,26962752-26962899,
26964183-26964239,26964315-26964445,26964535-26964623,
26964694-26965007,26965084-26965176,26966504-26966578,
26966834-26966895,26967254-26967356,26967518-26967676,
26967790-26967930,26967981-26968084,26968146-26968260,
26969017-26969169,26969256-26969417
Length = 1646
Score = 29.9 bits (64), Expect = 1.3
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 383 PGTDLPPNDSPLQTDSGAHH 324
PGT PP+D+P D GA H
Sbjct: 1624 PGTTSPPSDTPKSDDKGAKH 1643
>01_06_1210 +
35430143-35430796,35430912-35431004,35431397-35431546,
35431817-35432076,35433378-35433641,35434475-35434682
Length = 542
Score = 29.1 bits (62), Expect = 2.3
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -3
Query: 444 PCLVPCSARSVPRDRPASCLSRNGS--PSQRLPPPDRLRSTPHA 319
P VP +A S AS S G+ P++ P PDR RSTP A
Sbjct: 68 PVSVPANASSPETPVDASGGSNAGATAPTRDAPQPDRSRSTPPA 111
>10_02_0195 +
6578384-6578629,6578710-6579300,6586302-6587512,
6587593-6587844,6587932-6588042,6588133-6588214,
6588299-6588382,6588464-6588658
Length = 923
Score = 28.7 bits (61), Expect = 3.0
Identities = 18/58 (31%), Positives = 22/58 (37%)
Frame = -3
Query: 450 TPPCLVPCSARSVPRDRPASCLSRNGSPSQRLPPPDRLRSTPHATRLRSPNHLTLSPS 277
TP LVP +A P C + GSP ++ P P SP L PS
Sbjct: 445 TPAPLVPITAAPPAPPSPPICTTPPGSPLPQISPVRGPSPPPQQVAPNSPTTLPRQPS 502
>01_05_0638 - 23871424-23871974,23872154-23872325
Length = 240
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/45 (31%), Positives = 18/45 (40%)
Frame = +2
Query: 380 LDRHEAGRSRGTDRALHGTKQGGVLXXXXXXXXXXXSEREAGGGG 514
L AGR +G +R G VL ++E GGGG
Sbjct: 50 LGEERAGRDQGEERPGDTNGGGNVLGAQTAAVAATNLDKETGGGG 94
>09_04_0110 +
14720800-14720932,14721015-14721144,14721231-14721925,
14722133-14722140
Length = 321
Score = 27.9 bits (59), Expect = 5.3
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +3
Query: 150 ENITVGLAAAGPGLWRAL--YTPKRSGDHQLRVLWAGRLVKGCPLTVKVSGGSESGDAS 320
E + V L A W A+ Y P+R+ D+ ++ W L K GG +SG AS
Sbjct: 75 EKLIVHLQALLGNRWAAIASYLPERT-DNDIKNYWNTHLKKKLKKMQAAGGGEDSGAAS 132
>04_04_1090 -
30764340-30764704,30765092-30765204,30765414-30765638,
30766432-30766553,30766617-30767174,30769207-30769477,
30772175-30773256
Length = 911
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/50 (30%), Positives = 19/50 (38%)
Frame = -3
Query: 429 CSARSVPRDRPASCLSRNGSPSQRLPPPDRLRSTPHATRLRSPNHLTLSP 280
C+AR R + G PS P DR++ H R R L P
Sbjct: 842 CAARRGAARRAEGDIVGGGKPSSHAPRQDRVQGDGHRARRRREERRRLPP 891
>10_08_0666 -
19691985-19692216,19692327-19692404,19692508-19692837,
19692913-19693158,19693224-19693483,19694469-19695023
Length = 566
Score = 27.5 bits (58), Expect = 7.0
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -3
Query: 417 SVPRDRPASCLSRNGSPSQRLPPPDRLRSTPHATRLRSPNHL 292
++ R PA + G+PS+RLP P H R P HL
Sbjct: 220 ALERGVPAVLAAAGGAPSRRLPFPAGAFDMAHCGRCLVPWHL 261
>05_06_0277 +
26885621-26886064,26886148-26886317,26887038-26887941,
26888544-26888575,26888862-26888928,26889116-26889173,
26889329-26889421,26890366-26890480,26890847-26890894,
26891012-26891057,26891161-26891231,26891865-26891870,
26891991-26892038,26892439-26892488,26892892-26893154
Length = 804
Score = 27.5 bits (58), Expect = 7.0
Identities = 17/41 (41%), Positives = 20/41 (48%)
Frame = -3
Query: 423 ARSVPRDRPASCLSRNGSPSQRLPPPDRLRSTPHATRLRSP 301
+R R R S GSP +R PP R +P A R RSP
Sbjct: 218 SRRSGRSRSRSPARDRGSPPRRRSPPARRERSP-APRSRSP 257
>05_05_0070 +
22148595-22148907,22148988-22149104,22149196-22149350,
22149987-22150061,22150179-22150469,22150942-22151292,
22151390-22151794
Length = 568
Score = 27.5 bits (58), Expect = 7.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -1
Query: 140 CRQGSFRSTGSSGTAIDSEYC 78
CR+GS S+ SSG A YC
Sbjct: 32 CRRGSSSSSASSGDASSESYC 52
>05_04_0337 -
20372378-20373094,20373320-20373379,20373992-20374266,
20374358-20374619
Length = 437
Score = 27.5 bits (58), Expect = 7.0
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -3
Query: 441 CLVPCSARSVPRDRPASCLSRNGSPSQRLPPP 346
C +A P PAS +RN + SQ L PP
Sbjct: 282 CSAAAAAPPPPPSLPASATTRNSNASQLLMPP 313
>04_04_1318 +
32608441-32608833,32608953-32608997,32609092-32609130,
32609382-32609552,32610042-32610194,32610362-32610397,
32611123-32611184,32611590-32611680,32611767-32611808,
32611904-32612012,32612161-32612275,32612354-32612403,
32612577-32612655,32612763-32612813,32612966-32613107,
32613315-32613359,32613634-32613741,32613843-32613884,
32614388-32614570,32614932-32615135
Length = 719
Score = 27.5 bits (58), Expect = 7.0
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 411 PRDRPASCLSRNGSPSQRLPPPDRLR 334
PR PA +R P+ R+PPP R R
Sbjct: 6 PRPLPAPAPARRFEPAVRVPPPRRRR 31
>02_05_1081 + 33971950-33972606
Length = 218
Score = 27.5 bits (58), Expect = 7.0
Identities = 15/56 (26%), Positives = 23/56 (41%)
Frame = -3
Query: 519 AGPPPPXXXXXXXXXXXXXXXRNTPPCLVPCSARSVPRDRPASCLSRNGSPSQRLP 352
A PPP +PP +A +VP+ R + + GSP++ LP
Sbjct: 39 ASPPPKVAAVSSPPVVKSAARVASPPPKAAAAA-AVPQGRRSPVARKQGSPTKELP 93
>03_01_0404 + 3138624-3140096
Length = 490
Score = 27.1 bits (57), Expect = 9.2
Identities = 21/61 (34%), Positives = 31/61 (50%)
Frame = -3
Query: 372 SPSQRLPPPDRLRSTPHATRLRSPNHLTLSPSADIL*LVDRPREHEADDHQIV*AYRELS 193
SP+ LPPPD L S P A L + ++ SP A + L+ + H DH + A +L
Sbjct: 87 SPASPLPPPDHL-SFPFA--LSAAATVSPSPGAQLHALLVK-NGHFPSDHYVTTALLQLQ 142
Query: 192 I 190
+
Sbjct: 143 L 143
>02_03_0220 +
16545571-16545573,16545717-16545818,16545980-16546008,
16549421-16553036
Length = 1249
Score = 27.1 bits (57), Expect = 9.2
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -1
Query: 422 RGQFPGTGQPRVYPGTDLPPNDSPLQTDSGAHHTRR 315
RG F + + P ++LPPN +PL H RR
Sbjct: 67 RGNFLPPNRSLLLPASNLPPNPNPLAPCRCRGHGRR 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,924,143
Number of Sequences: 37544
Number of extensions: 372237
Number of successful extensions: 1280
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1277
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -