Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_K17
         (524 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   1.9  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   1.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   3.3  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   5.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   5.8  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   5.8  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   7.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   7.7  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -3

Query: 396 ASCLSRNGSPSQRLPPPDRLRSTPH 322
           +S + R    S R P P  L S PH
Sbjct: 30  SSIVDRRSPSSSRSPSPSLLTSQPH 54


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 9/63 (14%)
 Frame = -3

Query: 384 SRNGSPSQRLPPPDRLRSTP---------HATRLRSPNHLTLSPSADIL*LVDRPREHEA 232
           SR+G PS  L  P R   TP         H  R + P   T  P A      DR +E E+
Sbjct: 126 SRDGPPSVSLSSPPREPGTPRINFTKLKRHHPRYKRP-RTTFEPRATDSRHYDRYKEEES 184

Query: 231 DDH 223
           +++
Sbjct: 185 NEN 187



 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -1

Query: 380 GTDLPPNDSPLQTDSGAHHTRRVSALRT 297
           G D P  D P ++ S       + ALRT
Sbjct: 452 GIDTPKKDGPTKSWSDESLNNALDALRT 479


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 261 LVDRPREHEADDHQI 217
           LVD P + E DD Q+
Sbjct: 683 LVDAPADQEGDDDQV 697


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 368 PPNDSPLQTDS 336
           PPND  ++TDS
Sbjct: 195 PPNDEGIETDS 205


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -3

Query: 375 GSPSQRLPPPDRLRSTPHATRLRSPNHLTLSPSADI 268
           GS ++ LP P   R      + +S   L ++  ADI
Sbjct: 55  GSSNEALPQPISKRKDKEHKKKKSKTILAVNAEADI 90


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -3

Query: 375 GSPSQRLPPPDRLRSTPHATRLRSPNHLTLSPSADI 268
           GS ++ LP P   R      + +S   L ++  ADI
Sbjct: 55  GSSNEALPQPISKRKDKEHKKKKSKTILAVNAEADI 90


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
 Frame = -1

Query: 425 VRGQFPGTGQPRVYPGTDL--PPNDSPLQT 342
           V G F    QP +YP  D+  P N  P +T
Sbjct: 441 VIGTFKLHRQPHIYPNPDVFDPDNFLPEKT 470


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
 Frame = -3

Query: 414  VPRDRPASCLSRNGSPSQR----LPPPDRLRSTPHAT 316
            +P+D+  S LSR     Q+    L   D+++  P  T
Sbjct: 1488 IPKDKSVSVLSRENEAGQKEVKVLLGSDKIKFVPGTT 1524


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,221
Number of Sequences: 438
Number of extensions: 3544
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14722920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)