Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_K16
         (463 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    28   0.80 
SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos...    25   4.3  
SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces pom...    25   7.4  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    24   9.8  

>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 27.9 bits (59), Expect = 0.80
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +2

Query: 278 LNQINNIYVYDXXXXXXXXXXEIWSKFSKKSYKKLIFI 391
           L++IN I++YD          ++  KF +  Y K I++
Sbjct: 76  LDEINAIFLYDSSMAGMNRIYDLVQKFRRGGYSKKIYL 113


>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
           5-trisphosphate3-phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -3

Query: 332 KVIKAFKNHIHKCYLFDSVQTNTFKSSKCLFIISKKEILYSL 207
           +++K F N++ K   F++  T  FKS KCL I     ++ SL
Sbjct: 183 EILKQFPNYL-KAVEFNT-GTTFFKSFKCLNIKKNSSLILSL 222


>SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 9/40 (22%), Positives = 23/40 (57%)
 Frame = +1

Query: 169 CLNHN*VRFVRRISE*RISFLEIINKHLLDLNVLVCTESN 288
           C+NH+   +++++S  R  F+E+ +    ++  +V  E +
Sbjct: 244 CVNHSPEHYLQKLSAARAQFMEVYDTVKAEVEKMVTPEQH 283


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 10/24 (41%), Positives = 19/24 (79%)
 Frame = -1

Query: 253 ANVYLLFLKKKFSIHLSDEQSVLN 182
           A+VYL++LK+  + +LS+E+  +N
Sbjct: 591 ASVYLIYLKQMETKNLSEEKPQVN 614


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,886,423
Number of Sequences: 5004
Number of extensions: 35636
Number of successful extensions: 74
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)