Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_K16
         (463 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0761 + 5849466-5850677                                           28   4.2  
11_08_0026 + 27752519-27755441,27755538-27755923                       27   5.6  
06_03_0673 + 23394027-23394094,23394267-23394539,23394613-233949...    27   7.3  
05_04_0049 + 17497255-17497908                                         27   7.3  
08_02_0222 + 14446967-14448310                                         27   9.7  
05_01_0383 + 2990812-2990855,2991364-2991463,2991554-2991622,299...    27   9.7  
03_05_1054 + 29992101-29993032,29995378-29995401,29996790-29997423     27   9.7  

>07_01_0761 + 5849466-5850677
          Length = 403

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 80  YFIIKEVALGSRHAMSSMEASRWRP 154
           YF+++   L  R A   +EA +WRP
Sbjct: 235 YFLLRRAYLADRIAAFDLEAEQWRP 259


>11_08_0026 + 27752519-27755441,27755538-27755923
          Length = 1102

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
 Frame = -1

Query: 316 LKIIYINVIYLIQYKPTHSNRANV-YLLFLKKKFSIHLSDEQSVL--NYGLSTQRAGWTP 146
           L II ++ +      P+ SN ++  Y   L   F   L+D   +L  N+ ++T    W  
Sbjct: 13  LLIIALSAVTCASAVPSKSNGSDTDYAALLA--FKAQLADPLGILASNWTVNTPFCRWVG 70

Query: 145 SRCFHRRHRVT 113
            RC  R  RVT
Sbjct: 71  IRCGRRHQRVT 81


>06_03_0673 +
           23394027-23394094,23394267-23394539,23394613-23394958,
           23395031-23395168,23395260-23395385,23395464-23395652,
           23395723-23396202,23396274-23397236
          Length = 860

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +1

Query: 85  YYKGGRA-RLASRDVFYGSIAMASNPPAVCLN 177
           Y KGG A RLA  DVF  +   A  PP    N
Sbjct: 115 YEKGGEASRLAGVDVFVAAADAAREPPLATAN 146


>05_04_0049 + 17497255-17497908
          Length = 217

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +2

Query: 17  APPGAASKLWIPGLRIARHHEYFIIKEVALGSRHAMSSMEASRWRPTRP 163
           APP  +  L  P L    H + F++   A+G R    S E    RP+RP
Sbjct: 114 APPPPSPLLEAPVLATEEHADNFVVVVAAVGHRAETGSGE----RPSRP 158


>08_02_0222 + 14446967-14448310
          Length = 447

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 74  HEYFIIKEVALGSRH 118
           HEY ++K  ALG+RH
Sbjct: 137 HEYAVVKPAALGARH 151


>05_01_0383 +
           2990812-2990855,2991364-2991463,2991554-2991622,
           2991724-2991960,2992045-2992228,2992307-2992442,
           2992529-2992691,2992958-2993108,2993154-2993278,
           2993349-2993504,2993792-2993860,2993951-2994019,
           2994127-2994264,2994626-2994773,2994856-2994866,
           2995212-2995352,2995441-2995569,2995860-2995899,
           2996020-2996348,2996902-2996919
          Length = 818

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = -2

Query: 159 RVGRHRDASIEDIA*REPSAT--SFIIKYS*CLAILSPGIHSLDAAPGGAPA 10
           R+G +R+A+  +I  R  +    +F +     L +L  G+  LDA  GGA A
Sbjct: 742 RLGLYREATQGEITGRAVTVAVDAFAVSEKPLLRLLVAGVVELDAVHGGAAA 793


>03_05_1054 + 29992101-29993032,29995378-29995401,29996790-29997423
          Length = 529

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -2

Query: 108 PSATSFIIKYS*CLAILSPGIHSLDAAPGGAPAF 7
           P ATSF    S CL+  +  I +    PGG PAF
Sbjct: 303 PIATSFKRSCSACLSARAMNILNQPINPGGHPAF 336


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,859,200
Number of Sequences: 37544
Number of extensions: 214525
Number of successful extensions: 475
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)