Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_K16
         (463 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81536-6|CAB04370.1|  352|Caenorhabditis elegans Hypothetical pr...    28   3.7  
AF067942-6|AAG45579.1|  345|Caenorhabditis elegans Hypothetical ...    27   4.9  
U23515-14|AAN65299.1|  285|Caenorhabditis elegans Hypothetical p...    27   6.5  
U00044-7|AAA50675.1|  990|Caenorhabditis elegans Hypothetical pr...    27   6.5  
L14433-8|AAA27971.3| 1249|Caenorhabditis elegans Uncoordinated p...    27   6.5  
AL032620-1|CAA21487.1|  354|Caenorhabditis elegans Hypothetical ...    27   6.5  

>Z81536-6|CAB04370.1|  352|Caenorhabditis elegans Hypothetical
           protein F40D4.8 protein.
          Length = 352

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -3

Query: 368 IFWKICSIFLKKKVIKAFKNHIHKCYLFDSVQTNTFKSSKCLFIISK 228
           I + I SIFL+  VI  F N +   ++  S+   T     C F+ S+
Sbjct: 278 ILYIIKSIFLQSLVISNFANKLQSIFVLISIINGTLHFLICFFMSSQ 324


>AF067942-6|AAG45579.1|  345|Caenorhabditis elegans Hypothetical
           protein ZK6.4 protein.
          Length = 345

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -3

Query: 353 CSIFLKKKVIKAFKNHIHKCYLFDSVQTNTFKSSKCLF 240
           C IF ++ + +     + KCYL ++  T T  + KC+F
Sbjct: 28  CKIFFRRLITRT--TPVKKCYLGENCFTKTPITQKCVF 63


>U23515-14|AAN65299.1|  285|Caenorhabditis elegans Hypothetical
           protein R144.2b protein.
          Length = 285

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 311 NHIHKCYLFDSVQTNTFKSSKCLFIISKKEILY 213
           +H+ +C  F  +      SS  LFI+ KKE+LY
Sbjct: 214 SHVFQCITFYVLSLFFHISSDRLFIMKKKEMLY 246


>U00044-7|AAA50675.1|  990|Caenorhabditis elegans Hypothetical
           protein K04C2.2 protein.
          Length = 990

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 298 NVIYLIQYKPTHSNRANVYLLFLKKKFSIHLSDEQ 194
           NV   ++ + +HS     Y  F+KK  SI  SD+Q
Sbjct: 186 NVYLALRLRNSHSTVVAKYAKFVKKDGSIQFSDDQ 220


>L14433-8|AAA27971.3| 1249|Caenorhabditis elegans Uncoordinated
           protein 36 protein.
          Length = 1249

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = -1

Query: 211 HLSDEQSVLNYGLSTQRAGWTPSRCFHRRHRVTRAERDLLYNKILVMSGDSQ 56
           H+S E++   Y      +G  P  C +RR+ V +   D+     L+ S D+Q
Sbjct: 762 HMSKEEAFEIYAQQMSDSGKAPLLCEYRRNLVEKLLLDMEATSNLIDSWDTQ 813


>AL032620-1|CAA21487.1|  354|Caenorhabditis elegans Hypothetical
           protein Y36E3A.1 protein.
          Length = 354

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = -3

Query: 359 KICSIFLKKKVIKAFKNHIHKCYL-FDSVQTNTFKSSKCLFIISKKEILYS 210
           K+  +F  +KV + F++ ++  ++ F S+  + FK  K   +I  KEI+Y+
Sbjct: 70  KLFELFKIQKVSRGFRSFVNNHHVGFKSINIS-FKLEKIEMLIDGKEIVYA 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,433,276
Number of Sequences: 27780
Number of extensions: 202466
Number of successful extensions: 398
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)