Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_K16
         (463 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    21   4.9  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    21   4.9  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   6.5  
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    21   8.5  

>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -3

Query: 350 SIFLKKKVIKAFKNHIHKC 294
           S+F K  + +AF+    KC
Sbjct: 60  SVFFKSHITEAFQTQCKKC 78


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -3

Query: 350 SIFLKKKVIKAFKNHIHKC 294
           S+F K  + +AF+    KC
Sbjct: 60  SVFFKSHITEAFQTQCKKC 78


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 377 FYRIFWKICSIFLKKKVIK 321
           FY ++ KI S FL+ K ++
Sbjct: 420 FYMLYQKILSYFLRYKKLQ 438


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 8/34 (23%), Positives = 18/34 (52%)
 Frame = -3

Query: 269 NTFKSSKCLFIISKKEILYSLIRRTKRT*LWFKH 168
           N FK+++ L +  +  +  SL     +  +WF++
Sbjct: 25  NKFKTTRYLSVCERLNLALSLSLTETQVKIWFQN 58


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,833
Number of Sequences: 438
Number of extensions: 2758
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12312900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)