Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_K14
         (478 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC902.05c |idh2|glu2|isocitrate dehydrogenase |Schizosaccharom...   164   5e-42
SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase |Schizosaccharom...   136   2e-33
SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces ...    76   3e-15
SPBC1A4.02c |leu1|SPBC1E8.07c|3-isopropylmalate dehydrogenase Le...    36   0.004
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    27   1.1  
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    26   2.6  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   2.6  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   2.6  
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    25   4.5  
SPAC23D3.08 |usp108||U1 snRNP-associated protein Usp108|Schizosa...    25   7.9  
SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10 |Schizo...    25   7.9  
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb...    25   7.9  
SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom...    25   7.9  

>SPBC902.05c |idh2|glu2|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score =  164 bits (399), Expect = 5e-42
 Identities = 79/133 (59%), Positives = 98/133 (73%)
 Frame = +1

Query: 79  STGVRKVTLIPGHGIGPEITVAVQKIFEAAKVPIEWDEVDVTAVRGPDGKFGIPQKAIDS 258
           + G   VT+I G GIGPEI  +V++IF+AAKVPIEW+ V V  +   +G   IP  A +S
Sbjct: 42  ANGNYTVTMIAGDGIGPEIAQSVERIFKAAKVPIEWERVKVYPIL-KNGTTTIPDDAKES 100

Query: 259 VNANKIGLKGPLMTPVGKGYRSLNLALRKEFDLYANVRPCKSLDGIKTLYDNVDVVTIRE 438
           V  NK+ LKGPL TP+GKG+ S+NL LR+ F L+ANVRPC S+ G KT YDNV+ V IRE
Sbjct: 101 VRKNKVALKGPLATPIGKGHVSMNLTLRRTFGLFANVRPCVSITGYKTPYDNVNTVLIRE 160

Query: 439 NTEGEYSGIEHEI 477
           NTEGEYSGIEHE+
Sbjct: 161 NTEGEYSGIEHEV 173


>SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score =  136 bits (328), Expect = 2e-33
 Identities = 74/150 (49%), Positives = 97/150 (64%), Gaps = 2/150 (1%)
 Frame = +1

Query: 31  MIRKIVPASRAGAAHYSTGVRKVTLIPGHGIGPEITVAVQKIFEAAKVPIEWDEVDVTAV 210
           M + +V  S A       G   VTLIPG GIG E + AV +IF+ A VPIE++E+DVT +
Sbjct: 1   MFKSLVRKSSAFQPLKYGGKYTVTLIPGDGIGRETSNAVTEIFKTANVPIEFEEIDVTGM 60

Query: 211 RGPDGKFGIP-QKAIDSVNANKIGLKGPLMTPVGKG-YRSLNLALRKEFDLYANVRPCKS 384
              +   G    +AI S+  NK+GLKG L TP  KG + S N+ALRKE D+YA++   K+
Sbjct: 61  EKNNKSSGDALHEAIQSLKRNKVGLKGILFTPFEKGGHTSFNVALRKELDIYASLVLIKN 120

Query: 385 LDGIKTLYDNVDVVTIRENTEGEYSGIEHE 474
           + G KT +DNVD   IRENTEGEYSG+EH+
Sbjct: 121 IPGFKTRHDNVDFAIIRENTEGEYSGLEHQ 150


>SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 362

 Score = 75.8 bits (178), Expect = 3e-15
 Identities = 50/125 (40%), Positives = 72/125 (57%), Gaps = 7/125 (5%)
 Frame = +1

Query: 103 LIPGHGIGPEITVAVQKIFE--AAKVPIEWDEVDVTAVRGPDGKFG--IPQKAIDSVNAN 270
           LIP  GIG E+  A +++ E   AK  +++D +D+ A  G   + G  +P++ ++ +   
Sbjct: 11  LIPADGIGKEVVPAARRLMENLPAKHKLKFDFIDLDAGWGTFERTGKALPERTVERLKTE 70

Query: 271 -KIGLKGPLMTPVGK--GYRSLNLALRKEFDLYANVRPCKSLDGIKTLYDNVDVVTIREN 441
               L G + +P  K  GY S  +ALRK+  LYANVRP KSLDG K     VD+V +REN
Sbjct: 71  CNAALFGAVQSPTHKVAGYSSPIVALRKKMGLYANVRPVKSLDGAKG--KPVDLVIVREN 128

Query: 442 TEGEY 456
           TE  Y
Sbjct: 129 TECLY 133


>SPBC1A4.02c |leu1|SPBC1E8.07c|3-isopropylmalate dehydrogenase
           Leu1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 371

 Score = 35.5 bits (78), Expect = 0.004
 Identities = 43/142 (30%), Positives = 66/142 (46%), Gaps = 18/142 (12%)
 Frame = +1

Query: 91  RKVTLIPGHGIGPEITVAVQKIFEAA--KVPIEWDEVDVTAVRGPD-GKFGIPQ-----K 246
           +K+ ++PG  IGPEI  +  ++ +    K P    E +   + G     +G P      K
Sbjct: 4   KKIVVLPGDHIGPEIVASALEVLKVVEKKRPELKLEFEEHKIGGASIDAYGTPLTDETVK 63

Query: 247 AIDSVNANKIG-LKGPLMT-PVGKGYRSLNLALRKEFDLYANVRPC----KSL---DGIK 399
           A    +   +G + GP  T P  +  + L L LRK   ++AN+RPC    KSL     +K
Sbjct: 64  ACLEADGVLLGAVGGPEWTNPNCRPEQGL-LKLRKSMGVWANLRPCNFASKSLVKYSPLK 122

Query: 400 -TLYDNVDVVTIRENTEGEYSG 462
             + + VD   +RE T G Y G
Sbjct: 123 PEIVEGVDFCVVRELTGGCYFG 144


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
            orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 18/45 (40%), Positives = 22/45 (48%)
 Frame = -3

Query: 215  PLTAVTSTSSHSMGTLAASNIFCTATVISGPIPWPGISVTFRTPV 81
            P TAVT TSS    T   S+    +TV+ G   +P   VT  T V
Sbjct: 1394 PTTAVTETSSSGYYTTIVSST-VVSTVVPGSTVYPVTHVTTTTGV 1437


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = -3

Query: 464 IPEYSPSVFSRMVTTSTLSYRVLMPSKLLQGLTLAYKSNSFLSAKLSDL*PLPTGVI 294
           IPEYS    + +  T+   + +  P+K + G  +   +N +L  K++    LPTG I
Sbjct: 516 IPEYSKLNVTAVNLTNHSYWNLASPNKTIDGTIIKSTTNVYL--KVNSETSLPTGDI 570


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -3

Query: 221 SGPLTAVTSTSSHSMGTLAASNIFCTATVISGPIPWPGISVTFRT 87
           S   TA +STS  S  +   SN+  +++ +S P P      TF T
Sbjct: 660 SSSSTATSSTSFASESSSFYSNVTTSSSTVSTPPPTTSFPSTFTT 704


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 18/43 (41%), Positives = 26/43 (60%)
 Frame = -3

Query: 266  ALTESIAFCGMPNLPSGPLTAVTSTSSHSMGTLAASNIFCTAT 138
            +L+ SIA   +   P+  +TAV+STSS   GT A+S I   A+
Sbjct: 1077 SLSSSIATASVTGSPTSSVTAVSSTSSVE-GT-ASSTIAAAAS 1117


>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = -2

Query: 183 FDGYFSSFKYFLHSHSDLGTDTVAGDQRHLSYSRAVVRCTSPT 55
           +  Y S+F    H  S   T  +    +HL +S    +C+ PT
Sbjct: 84  YQSYSSTFNVSNHVPSISKTVNIRETSKHLKHSTKAPKCSLPT 126


>SPAC23D3.08 |usp108||U1 snRNP-associated protein
           Usp108|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 18/81 (22%), Positives = 37/81 (45%)
 Frame = +1

Query: 94  KVTLIPGHGIGPEITVAVQKIFEAAKVPIEWDEVDVTAVRGPDGKFGIPQKAIDSVNANK 273
           +++ IP   + P I  A   I+ +     +++ +  +++  P+  +GIP  A+ S   N 
Sbjct: 181 RISFIPRVSVVPYIPDAAYGIYGSPSTFTQFNHM--SSMVTPENPYGIPPIALTSAGGNP 238

Query: 274 IGLKGPLMTPVGKGYRSLNLA 336
             L+   + P       LN+A
Sbjct: 239 DPLRTTQVFPHSGPSIPLNIA 259


>SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 199 VTAVRGPDGKFGIPQKAIDSVNANKIGLKGPL 294
           V+AVR P G FG    ++ +     I +KG L
Sbjct: 9   VSAVRTPMGSFGGSFASLPATKLGSIAIKGAL 40


>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 955

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +1

Query: 301 PVGKGYRSLN--LALRKEFDLYANVRPCKSLDGIKTLYDNVDVVTI 432
           PV   Y+S++  LA   +  L A V+   +   ++ L DN+D+VTI
Sbjct: 584 PVANVYQSVHSFLAPSLQSILLAQVKLNPTQAELEALADNIDIVTI 629


>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 412

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
 Frame = +1

Query: 139 VAVQKIFEAAKVPI-EWDEVDVTAVRGPDGKFGIPQKAIDSVNANKIGLKGPLMTPVGKG 315
           V  + I +AA+  I ++D + VT  RGP G  G     +++     +GL+ PL+      
Sbjct: 103 VIQRTISDAARSGITDFDLIAVT--RGP-GMIGPLAVGLNTAKGLAVGLQKPLLAVHHMQ 159

Query: 316 YRSLNLALRKEFDL-YANV 369
             +L + L K  D  Y N+
Sbjct: 160 AHALAVQLEKSIDFPYLNI 178


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.137    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,027,016
Number of Sequences: 5004
Number of extensions: 41796
Number of successful extensions: 124
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)