Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_K14
(478 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0072 + 22524974-22525310,22526334-22526552,22526826-225275... 31 0.64
05_03_0557 - 15441039-15442730 29 1.5
09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,397... 29 1.9
08_02_0201 + 14200684-14201412 29 1.9
09_04_0291 + 16433097-16433942,16434708-16434851,16435226-164353... 28 3.4
05_05_0174 - 22960732-22960815,22960907-22961419,22961576-229620... 28 3.4
07_03_0310 - 16574364-16574538,16574648-16574865,16574955-165750... 27 5.9
02_05_0705 - 31074246-31074296,31074632-31074770,31075636-310757... 27 5.9
09_04_0686 + 19457832-19457870,19458021-19458107,19459311-194593... 27 7.8
09_03_0034 + 11751965-11752010,11752138-11752205,11753142-117532... 27 7.8
04_04_1387 - 33172555-33173053,33173136-33173872 27 7.8
02_01_0388 + 2812235-2815003 27 7.8
>04_04_0072 +
22524974-22525310,22526334-22526552,22526826-22527532,
22527664-22528482
Length = 693
Score = 30.7 bits (66), Expect = 0.64
Identities = 18/44 (40%), Positives = 20/44 (45%)
Frame = -1
Query: 478 RSRARYQSTRPPCSHEWSLRPHCRIEF*CHLNSCKA*HWHISRT 347
R +RY S PCSHE L H R F +N C W RT
Sbjct: 298 REYSRYLSFNHPCSHEKPLLAHLRF-FPWVINECYFKIWRQGRT 340
>05_03_0557 - 15441039-15442730
Length = 563
Score = 29.5 bits (63), Expect = 1.5
Identities = 24/100 (24%), Positives = 43/100 (43%)
Frame = -3
Query: 422 TSTLSYRVLMPSKLLQGLTLAYKSNSFLSAKLSDL*PLPTGVIKGPLRPILFALTESIAF 243
+ TL YR + + L+GL + S L +KL+ P P + + +AF
Sbjct: 155 SGTLPYRTALAAVFLEGLIFLFISLVGLRSKLAKFIPKPVRISSSA------GIGLFLAF 208
Query: 242 CGMPNLPSGPLTAVTSTSSHSMGTLAASNIFCTATVISGP 123
G+ + L +S++ ++G AS A V++ P
Sbjct: 209 IGLQSSEGVGLVGFSSSTLVTLGACPASQRASVAPVVTFP 248
>09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,
3973665-3973982,3974565-3974763,3974937-3975202,
3975288-3975574,3976714-3977818,3977900-3978046,
3978146-3978226,3978315-3978540,3978622-3978761,
3979539-3979645,3979739-3979841
Length = 3638
Score = 29.1 bits (62), Expect = 1.9
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -2
Query: 165 SFKYFLHSHSDLGTDTVAGDQRHLSYSRAVVRCTSPTRWNNFPDHSCS 22
+F YF+ S S ++ D++ L++S + S NN P CS
Sbjct: 1835 AFNYFIDSASSTSRGSLIPDKKVLAFSELINSILSRNSQNNLPVLGCS 1882
>08_02_0201 + 14200684-14201412
Length = 242
Score = 29.1 bits (62), Expect = 1.9
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 73 HYSTGVRKVTLIPGHGIGPEITVAVQKIFEAAKVPIE 183
H +T V +V + HG GP + A+++ EA VP++
Sbjct: 155 HRNTTVVRVAMEGRHGFGPGLQGALEESEEAGNVPLD 191
>09_04_0291 +
16433097-16433942,16434708-16434851,16435226-16435390,
16435551-16435562
Length = 388
Score = 28.3 bits (60), Expect = 3.4
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Frame = -3
Query: 452 SPSVFSRMVTT-STLSYRV----LMPSKLLQGLTLAYKSNSFLSAKL 327
+P++ S MVT+ TL Y L P+KLL+GL +YK+ L L
Sbjct: 257 APNLLSAMVTSLETLDYYYYALPLSPTKLLKGLPSSYKNLKRLKVHL 303
>05_05_0174 -
22960732-22960815,22960907-22961419,22961576-22962058,
22964191-22964673
Length = 520
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +1
Query: 262 NANKIGLKGPLMTPVGKGYRSLNLALRKEFDLYANVRPCKSLDGIKTL 405
+A +GL + P+G+G+ +L+ ++ F L + P SL G+ +L
Sbjct: 337 SALNVGLGVGAILPLGRGFMNLSSSVPDRFYLGGHSSPVCSLSGLSSL 384
>07_03_0310 -
16574364-16574538,16574648-16574865,16574955-16575019,
16575101-16575191,16575407-16575613,16576805-16577041
Length = 330
Score = 27.5 bits (58), Expect = 5.9
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -3
Query: 458 EYSPSVFSRMVTTSTLSYRVLMPSKLLQGLTLAYKSNSFLS 336
+Y P + M T ++ + KLLQ L +A SFLS
Sbjct: 251 KYGPYIAGSMAGTVHETFLAIYSGKLLQSLAVATTQGSFLS 291
>02_05_0705 -
31074246-31074296,31074632-31074770,31075636-31075716,
31077228-31077401,31077501-31077649
Length = 197
Score = 27.5 bits (58), Expect = 5.9
Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = +1
Query: 112 GHGIGPE---ITVAVQKIFEAAKVPIEWDEVDVTAVR 213
G G+ PE I A+ K + ++P++WD+ D+ ++
Sbjct: 118 GVGVTPEAQSIFDALSKTYILLRLPVQWDKTDIVVMK 154
>09_04_0686 +
19457832-19457870,19458021-19458107,19459311-19459391,
19459463-19459489,19459589-19459651,19459768-19459854,
19460290-19460415,19460827-19460960,19461037-19461109,
19461307-19461372,19461778-19461816,19461927-19462051,
19462131-19462245,19463109-19463141,19463525-19463593
Length = 387
Score = 27.1 bits (57), Expect = 7.8
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Frame = +1
Query: 34 IRKIVPASRAGA-AHYSTGVRKVTL---IPGHGIGPEITVA-VQKIFEAAKVPIE 183
+R I P RA A R VT+ P HGIG EI ++ V++ FE P+E
Sbjct: 278 LRSIRPLDRATINASVRKTNRLVTIEESFPQHGIGAEICMSVVEESFEYLDAPVE 332
>09_03_0034 +
11751965-11752010,11752138-11752205,11753142-11753252,
11753626-11753712,11753800-11754008,11754653-11754926,
11756595-11757079,11758367-11758484,11758584-11758700,
11758779-11758925,11759061-11759135,11759198-11759266,
11759914-11760024,11760183-11760267,11760404-11760501,
11760628-11760720,11760806-11760880
Length = 755
Score = 27.1 bits (57), Expect = 7.8
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +1
Query: 70 AHYSTGVRKVTLIPGHGIGPEITVAVQKIFEAAKVPIEWDEVDVTA 207
+ ++ G+R L GH + A I E EWDE+D+ A
Sbjct: 687 SEFAVGIRSALLGKGHST---LVYAGAGIVEGTNPSFEWDELDLKA 729
>04_04_1387 - 33172555-33173053,33173136-33173872
Length = 411
Score = 27.1 bits (57), Expect = 7.8
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = -3
Query: 224 PSGPLTAVTSTSSHSMGTLAASNIFCTATVISGPIPW 114
P P+ AVT T++ ++ + +++ T ++ GP+ W
Sbjct: 168 PPRPVIAVTPTTTSALQVPSLTSMAHTLRLVDGPLTW 204
>02_01_0388 + 2812235-2815003
Length = 922
Score = 27.1 bits (57), Expect = 7.8
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -3
Query: 470 CSIPEYSPSVFSRMVTTSTLSYRVLMPSKLLQGLTLAYKSNSF 342
C EY+ VFSRMVT +S+ + + L+Q L N+F
Sbjct: 467 CRNMEYARQVFSRMVTKDIVSWNSFL-AALVQNDLLDEARNTF 508
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.137 0.396
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,641,966
Number of Sequences: 37544
Number of extensions: 286824
Number of successful extensions: 821
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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