Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_K14
(478 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79755-1|CAB02111.2| 358|Caenorhabditis elegans Hypothetical pr... 220 5e-58
Z46242-1|CAA86325.2| 396|Caenorhabditis elegans Hypothetical pr... 99 2e-21
AC006610-5|AAK85453.1| 373|Caenorhabditis elegans Hypothetical ... 97 6e-21
Z81046-1|CAB02822.1| 379|Caenorhabditis elegans Hypothetical pr... 95 2e-20
Z78417-5|CAB01686.1| 1224|Caenorhabditis elegans Hypothetical pr... 28 3.0
AC024200-14|AAF36005.1| 557|Caenorhabditis elegans Hypothetical... 28 3.0
Z81049-2|CAB02847.2| 576|Caenorhabditis elegans Hypothetical pr... 27 5.3
AB030946-1|BAA90483.1| 576|Caenorhabditis elegans high-affinity... 27 5.3
AC024799-8|AAW88387.1| 297|Caenorhabditis elegans Hypothetical ... 27 7.0
>Z79755-1|CAB02111.2| 358|Caenorhabditis elegans Hypothetical
protein F43G9.1 protein.
Length = 358
Score = 220 bits (537), Expect = 5e-58
Identities = 108/155 (69%), Positives = 127/155 (81%), Gaps = 2/155 (1%)
Frame = +1
Query: 19 MAARMIRKIVPASRAGAA-HYSTG-VRKVTLIPGHGIGPEITVAVQKIFEAAKVPIEWDE 192
M + I+K +S G + YS+G VR+VTLIPG GIGPEI+ +VQKIFEAA PI WD
Sbjct: 1 MLGKCIKKA--SSTVGQSIRYSSGDVRRVTLIPGDGIGPEISASVQKIFEAADAPIAWDP 58
Query: 193 VDVTAVRGPDGKFGIPQKAIDSVNANKIGLKGPLMTPVGKGYRSLNLALRKEFDLYANVR 372
VDVT V+G DG F IP + I+ ++ANK+GLKGPL TP+GKG+RSLNLA+RKEF LYANVR
Sbjct: 59 VDVTPVKGRDGVFRIPSRCIELMHANKVGLKGPLETPIGKGHRSLNLAVRKEFSLYANVR 118
Query: 373 PCKSLDGIKTLYDNVDVVTIRENTEGEYSGIEHEI 477
PC+SL+G KTLYDNVDVVTIRENTEGEYSGIEHEI
Sbjct: 119 PCRSLEGHKTLYDNVDVVTIRENTEGEYSGIEHEI 153
>Z46242-1|CAA86325.2| 396|Caenorhabditis elegans Hypothetical
protein F35G12.2 protein.
Length = 396
Score = 98.7 bits (235), Expect = 2e-21
Identities = 50/131 (38%), Positives = 79/131 (60%), Gaps = 1/131 (0%)
Frame = +1
Query: 85 GVRKVTLIPGHGIGPEITVAVQKIFEAAKVPIEWDEVDVTAVRGPDGKFGIPQKAIDSVN 264
G VT++PG GIGPE+ V++I A + P++++ V++T+ +AI ++
Sbjct: 50 GRHNVTVLPGDGIGPEMLHHVERILSAVQAPVDFEVVNLTSKEDASEDLA---EAITAIK 106
Query: 265 ANKIGLKGPLMTPVGK-GYRSLNLALRKEFDLYANVRPCKSLDGIKTLYDNVDVVTIREN 441
N + LKG + T + S NL LR++ +LYANV C ++ + + + +D+V IREN
Sbjct: 107 RNGVALKGNIETKFDNPSFVSRNLELRRQLNLYANVLHCSTIPTVPSRHTGIDMVIIREN 166
Query: 442 TEGEYSGIEHE 474
TEGEYSG EHE
Sbjct: 167 TEGEYSGNEHE 177
>AC006610-5|AAK85453.1| 373|Caenorhabditis elegans Hypothetical
protein C30F12.7 protein.
Length = 373
Score = 97.1 bits (231), Expect = 6e-21
Identities = 54/144 (37%), Positives = 79/144 (54%), Gaps = 1/144 (0%)
Frame = +1
Query: 46 VPASRAGAAHYSTGVRKVTLIPGHGIGPEITVAVQKIFEAAKVPIEWDEVDVTAVRGPDG 225
+P R A Y G V +PG GIGPE+ ++ IF P+ ++EV V++ DG
Sbjct: 22 IPGHRLPLAKYG-GRHTVCALPGDGIGPEMIAHIRNIFSFCHAPVNFEEVQVSSSL-LDG 79
Query: 226 KFGIPQKAIDSVNANKIGLKGPLMTPVGKG-YRSLNLALRKEFDLYANVRPCKSLDGIKT 402
AI+ N + +KG + T + S N+ LR + DLYAN+ C ++ + T
Sbjct: 80 DMDAAMLAIER---NGVAIKGNIETKHDDPQFNSRNVELRTKLDLYANILHCVTIPTVPT 136
Query: 403 LYDNVDVVTIRENTEGEYSGIEHE 474
+ +D+V IRENTEGEYSG+EHE
Sbjct: 137 RHSGIDIVLIRENTEGEYSGLEHE 160
>Z81046-1|CAB02822.1| 379|Caenorhabditis elegans Hypothetical
protein C37E2.1 protein.
Length = 379
Score = 95.5 bits (227), Expect = 2e-20
Identities = 53/134 (39%), Positives = 81/134 (60%), Gaps = 6/134 (4%)
Frame = +1
Query: 94 KVTLIPGHGIGPEITVAVQKIFEAAKVPIEWDEVDVTAVRGPDGKFGIPQKAIDSVNA-N 270
KVT+IPG G+GPE+ VQ I + +PIE++E+ ++ V + + A++S+ N
Sbjct: 44 KVTIIPGDGVGPELIYTVQDIVKQTGIPIEFEEIFLSEVHYT--RSSSIENAVESIGRNN 101
Query: 271 KIGLKGPL----MTPVGKGYRSLNLALRKEFDLYANVRPCKSLDGIKTLY-DNVDVVTIR 435
+ LKG + + + LN+ LR+ DL+ANV K+LDGIKT + +D V +R
Sbjct: 102 NVALKGAIEESAVLHTEGELQGLNMRLRRSLDLFANVVHIKTLDGIKTRHGKQLDFVIVR 161
Query: 436 ENTEGEYSGIEHEI 477
E TEGEYS +EHE+
Sbjct: 162 EQTEGEYSSLEHEL 175
>Z78417-5|CAB01686.1| 1224|Caenorhabditis elegans Hypothetical protein
C35C5.6 protein.
Length = 1224
Score = 28.3 bits (60), Expect = 3.0
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = -2
Query: 210 DSCDVHFIPFDGYFSSFKYFLHSHSDLGTDTVAGDQR--HLSYSRAVVRCTSPTRWNNFP 37
+S D+ IPF G + ++ + HSD+ T+ +R L + +++ + + W+ P
Sbjct: 914 ESNDMDLIPFTGRLLTAEFIVRYHSDITTEDGNSFERKCKLPIAISIIPAVTVSAWHVLP 973
Query: 36 DHS 28
S
Sbjct: 974 GDS 976
>AC024200-14|AAF36005.1| 557|Caenorhabditis elegans Hypothetical
protein Y71F9AL.4 protein.
Length = 557
Score = 28.3 bits (60), Expect = 3.0
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = -2
Query: 135 DLGTDTVAGDQRHLSYSRAVVRCTSPTRW--NNFP-DHSCSHF 16
D G T+AGD+ ++ V CT P R+ P +++C+HF
Sbjct: 210 DRGRFTLAGDENFYIHANFVKICTKPERFVCTQGPMENTCTHF 252
>Z81049-2|CAB02847.2| 576|Caenorhabditis elegans Hypothetical
protein C48D1.3 protein.
Length = 576
Score = 27.5 bits (58), Expect = 5.3
Identities = 14/57 (24%), Positives = 29/57 (50%)
Frame = +1
Query: 133 ITVAVQKIFEAAKVPIEWDEVDVTAVRGPDGKFGIPQKAIDSVNANKIGLKGPLMTP 303
+++ +K+F++ ++ EWD V V P +P +V++ + +K P TP
Sbjct: 491 VSIQSEKLFKSGRLSPEWD-VMGCVVNIPIDHVPLPSDVSFAVSSETLNMKAPNGTP 546
>AB030946-1|BAA90483.1| 576|Caenorhabditis elegans high-affinity
choline transporterCHO-1 protein.
Length = 576
Score = 27.5 bits (58), Expect = 5.3
Identities = 14/57 (24%), Positives = 29/57 (50%)
Frame = +1
Query: 133 ITVAVQKIFEAAKVPIEWDEVDVTAVRGPDGKFGIPQKAIDSVNANKIGLKGPLMTP 303
+++ +K+F++ ++ EWD V V P +P +V++ + +K P TP
Sbjct: 491 VSIQSEKLFKSGRLSPEWD-VMGCVVNIPIDHVPLPSDVSFAVSSETLNMKAPNGTP 546
>AC024799-8|AAW88387.1| 297|Caenorhabditis elegans Hypothetical
protein Y49C4A.2 protein.
Length = 297
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1
Query: 442 CSHEWSLRPHCRIEF*CHLNSCKA*HWHISRTL 344
CS++ + CR F C +N+C W + RT+
Sbjct: 145 CSYQMEIPSTCRF-FGCAINTCFNSFWSVHRTI 176
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.317 0.137 0.396
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,388,247
Number of Sequences: 27780
Number of extensions: 245240
Number of successful extensions: 752
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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