Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_K14
         (478 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    27   0.10 
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   2.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.2  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   3.9  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   6.8  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.0  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   9.0  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 27.1 bits (57), Expect = 0.10
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +1

Query: 301 PVGKGYRSLNLALRKEFDLYANVRPCKSLDGIK 399
           PV + Y+SLNLA +K  + Y++    KSL  +K
Sbjct: 445 PVNENYKSLNLAAQKR-EYYSHYVAFKSLSYLK 476


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 232 GIPQKAIDSVNANKIGLKGPLMTP 303
           G+P     +V +NKIG  GPL+ P
Sbjct: 86  GVPSSL--NVISNKIGNGGPLLEP 107


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 177 GYFSSFKYFLHSHSDLG 127
           GYFSS K   H  ++LG
Sbjct: 122 GYFSSLKDHQHQFAELG 138


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 355 LYANVRPCKSLDGIKTLYDN 414
           L  N+R   +LDG+  L DN
Sbjct: 146 LIRNLRQSSALDGVTLLADN 165


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 172 VPIEWDEVDVTAVR 213
           + +EWD + V AVR
Sbjct: 198 ISVEWDIIKVPAVR 211


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 178 IEWDEVDVTAVR 213
           +EWD ++V AVR
Sbjct: 208 VEWDILEVPAVR 219


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 178 IEWDEVDVTAVR 213
           +EWD ++V AVR
Sbjct: 208 VEWDILEVPAVR 219


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 178 IEWDEVDVTAVR 213
           +EWD ++V AVR
Sbjct: 204 VEWDILEVPAVR 215


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.137    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,713
Number of Sequences: 438
Number of extensions: 3312
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)