Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_K13
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   1.1  
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    27   1.9  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    26   4.4  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    26   4.4  
SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate transa...    26   4.4  
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p...    25   5.9  
SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1 |...    25   5.9  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 18/93 (19%), Positives = 37/93 (39%)
 Frame = +1

Query: 130 SAVSSQXXXXXXXXXXXXPCTMNPSARTVRSSSRHSWRPSGGTSEDSSRLSWCLMERARM 309
           S VSS               +  P++ +  SSS  S + S  +   S+ +S      +  
Sbjct: 370 STVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKSSSAPVSSAFYHNSTS 429

Query: 310 TR*MKSGLSRAITDLTNATEIRCKHASSRTAAS 408
           +R      S +++ L++   +    +S  T++S
Sbjct: 430 SRSSSHSSSHSLSSLSSKPILTASSSSLLTSSS 462


>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +1

Query: 130 SAVSSQXXXXXXXXXXXXPCTMNPSARTVRSSSRHSWRPSGGTSEDSSRLS 282
           S+ SS             P T + S+ +  SSS  S + S  +S+ SSR S
Sbjct: 123 SSSSSLVSSTTSSSSSATPSTTSSSSSSSSSSSSSSSKSSSSSSKSSSRSS 173


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 13  RVFLSAPKKRKSFVIKKHSC 72
           RVFL A ++R  F++  HSC
Sbjct: 733 RVFLVANRERHPFLVNLHSC 752


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 474 PKICPGSPETSSR*PVPSSP 415
           P+  P +P+ +S  P+PSSP
Sbjct: 196 PETVPSTPQPASSLPIPSSP 215


>SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate
           transaminase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 696

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = -2

Query: 555 GSPIVLQTRIALSCQIRFVCSLELGTYPKICPGSPETSSR*PVPSSPYHGG 403
           GSP+++  +     ++ FV  +E     +  PG+P+ +S  PV S+P   G
Sbjct: 194 GSPLIVGVKSEQKLKVDFV-DVEFPEPAEGLPGTPKPTSLHPVFSNPATNG 243


>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 832

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 9/22 (40%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = +3

Query: 267 LVKVKL-VPYGKSTHDKVNEKW 329
           L++++L + Y  S +D++NEKW
Sbjct: 776 LIRIELDIKYATSFYDELNEKW 797


>SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +1

Query: 322 KSGLSRAITDLTNATEIRCKHASSRTAASMIR 417
           +SG  + +  LTN+ E++ +HA +  AA  I+
Sbjct: 491 ESGQHKRMASLTNSREMQIQHAPTTFAAETIQ 522


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,406,268
Number of Sequences: 5004
Number of extensions: 48950
Number of successful extensions: 117
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)