Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_K13
(568 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0672 - 10325935-10326150,10326308-10326400,10326568-103267... 62 3e-10
01_06_1209 + 35427160-35427318,35427436-35427501,35427737-354278... 61 5e-10
03_02_0673 - 10328994-10329281 45 4e-05
05_01_0258 + 1984666-1984878,1985019-1985852 30 1.5
10_08_0372 + 17280560-17280811,17280901-17281065,17281305-172814... 29 2.0
03_01_0165 + 1335444-1335747,1335890-1336167,1337440-1337496 29 2.0
03_04_0237 - 19201789-19202421 29 3.4
12_02_0763 + 22953749-22953884,22955036-22955199,22955695-229563... 28 4.5
01_07_0021 - 40533864-40534583,40534779-40534814,40534909-405350... 28 4.5
>03_02_0672 -
10325935-10326150,10326308-10326400,10326568-10326708,
10326828-10326893,10327099-10327359
Length = 258
Score = 62.1 bits (144), Expect = 3e-10
Identities = 36/97 (37%), Positives = 55/97 (56%), Gaps = 2/97 (2%)
Frame = +3
Query: 108 LICAVTMICGVLAKNKKTDDQKVKIAVYYESLCPDSKKFITTQLAPVWRD-FRGLVKVKL 284
L+ A+ ++ + KK KV +A+YYESLCP S F+ LA V+RD V + L
Sbjct: 12 LLAAILLLAAGAVEGKKGG--KVDVALYYESLCPYSAMFVVGSLAKVFRDGLLDAVDLSL 69
Query: 285 VPYGKSTHDKVNE-KWTFTCHHGPDECYGNKMQACIL 392
VPYG + +V + K + HG +EC+ N ++AC +
Sbjct: 70 VPYGNA---RVKDGKISCQVEHGSEECFLNTVEACAI 103
>01_06_1209 +
35427160-35427318,35427436-35427501,35427737-35427877,
35428342-35428434,35428530-35428646,35428890-35429054
Length = 246
Score = 61.3 bits (142), Expect = 5e-10
Identities = 27/73 (36%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Frame = +3
Query: 180 IAVYYESLCPDSKKFITTQLAPVWRD-FRGLVKVKLVPYGKSTHDKVNEKWTFTCHHGPD 356
++VYYE+LCP F+ LA ++RD +V ++LVP+G + +V+ + TC HG +
Sbjct: 1 MSVYYETLCPFCSGFVVNDLARIFRDGLSPVVDLRLVPFG---NGRVSPDGSITCQHGEE 57
Query: 357 ECYGNKMQACILK 395
EC N ++AC+++
Sbjct: 58 ECQLNAIEACVIR 70
>03_02_0673 - 10328994-10329281
Length = 95
Score = 45.2 bits (102), Expect = 4e-05
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Frame = +3
Query: 108 LICAVTMICGVLAKN---KKTDDQKVKIAVYYESLCPDSKKFITTQLAPVWRD-FRGLVK 275
L+ A ++ G L +KV +A+YYE+LCP +FI LA ++ D V
Sbjct: 14 LVSAAAVVAGALLPGCAAAAAAGEKVPLALYYETLCPYCSRFIVNHLAGIFEDGIVDAVD 73
Query: 276 VKLVPYGKS 302
++LVPYG +
Sbjct: 74 LRLVPYGNA 82
>05_01_0258 + 1984666-1984878,1985019-1985852
Length = 348
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +3
Query: 108 LICAVTMICGVLAKNKKTDDQKVKIAVYYESLCPDSKKFITTQLAPVWRDFRG 266
L+C V ++ A D+++K+ YYE C D +K + + + +D RG
Sbjct: 4 LVCFVVVVFMAAAAAMAGADRELKVG-YYEKTCKDVEKIVNSIVVNSIKDNRG 55
>10_08_0372 +
17280560-17280811,17280901-17281065,17281305-17281410,
17281432-17281487,17281607-17282201,17282863-17282975,
17283106-17283326,17284113-17284437
Length = 610
Score = 29.5 bits (63), Expect = 2.0
Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 14/97 (14%)
Frame = +3
Query: 189 YYESLCPDSKKFITTQLAPV--------WRDFRGLVKVKLVPYGKSTHDKVNEKWTFTC- 341
+YE CP ++ + + P W R +V +P+ H+K ++ W
Sbjct: 116 HYERHCPPPERRLNCLIPPPHGYKVPIKWPKSRDIVWKANIPHTHLAHEKSDQNWMIDAG 175
Query: 342 -----HHGPDECYGNKMQACILKDRSLHDTEKMELVI 437
HHG D+ N KD ++++ + V+
Sbjct: 176 GGTHFHHGADKYIANIANMLKFKDNNINNEGMLRTVL 212
>03_01_0165 + 1335444-1335747,1335890-1336167,1337440-1337496
Length = 212
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = -3
Query: 152 ILCEDTADHGHSAYQLLIASSCTCKSGHECFLITKLFLFFGA 27
ILC TA G +AY L +A +C+ G C+++ K + FGA
Sbjct: 100 ILCAYTACGGGAAY-LWVAVACSV--GSVCYVVAKAAVVFGA 138
>03_04_0237 - 19201789-19202421
Length = 210
Score = 28.7 bits (61), Expect = 3.4
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = -2
Query: 567 KRPG-GSPIVLQ--TRIALSCQIRFVCSLELGTYPKICPGSPETSS 439
K PG SPI + +IAL+C + SL T P GSPE S+
Sbjct: 127 KMPGPNSPITISGDVKIALACAEQRADSLAAATEPVEAGGSPEASA 172
>12_02_0763 +
22953749-22953884,22955036-22955199,22955695-22956307,
22968553-22968874,22969107-22969373,22969692-22970460
Length = 756
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Frame = -3
Query: 290 RHQLNLDESSEVPP---DGRQLCRDELLTVRAEG 198
RH+ D SSE PP DG + RDE T R G
Sbjct: 175 RHRCRADPSSESPPATADGIYVPRDEAFTERRAG 208
>01_07_0021 -
40533864-40534583,40534779-40534814,40534909-40535048,
40535837-40535922,40536430-40536653,40536770-40536865,
40538766-40538833,40539945-40540055,40540799-40540955
Length = 545
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -2
Query: 474 PKICPGSPETSSR*PVPSSPYHGGCGP*GCMLASYFRS 361
P + P P T S P+PS+P+ G P G M A + S
Sbjct: 454 PPVPPPPPTTGSFMPIPSAPFAGLPVPAGPMTAVPYNS 491
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,388,385
Number of Sequences: 37544
Number of extensions: 347811
Number of successful extensions: 929
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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