Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_K12
         (547 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    28   0.78 
SPAC23H3.08c |bub3||mitotic spindle checkpoint protein Bub3|Schi...    27   1.4  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   1.8  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    25   7.3  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   9.6  
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac...    25   9.6  

>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 28.3 bits (60), Expect = 0.78
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -1

Query: 133 GNDSSGFVILKLSVTPFRSSEGIVS*FAVLL 41
           GND  G+++L LSVT   S  G+ + + +LL
Sbjct: 199 GNDVIGWILLALSVTLVNSGSGVRAVYILLL 229


>SPAC23H3.08c |bub3||mitotic spindle checkpoint protein
           Bub3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 320

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +3

Query: 420 KGFTLKCEK*IQKIYDILK*ETQLK 494
           K FT KC + IQK YDI+     LK
Sbjct: 216 KNFTFKCHRQIQKDYDIVYPVNDLK 240


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 13/31 (41%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
 Frame = -2

Query: 522  NSIFNK-FTPISIVSLISVCRKFSVFISHIL 433
            +++F+K  T   +++LIS C KFSV + HI+
Sbjct: 2344 STVFSKVLTDEVMMNLISSCYKFSVDLQHIM 2374


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 8    ANTVRDRKGLLKENCESRDNTLRRTERGHREFEYDK 115
            A+ +   KG+  + C +RD T+R+ E    +F+ DK
Sbjct: 1984 ASDIERIKGI--DECRNRDRTIRQLEAQISKFDDDK 2017


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +2

Query: 203  SNKLLIHLCENLQMIVRPT-TTKL 271
            + +L I LCE L++I+ PT  TK+
Sbjct: 4441 TKQLSIELCEQLRLILEPTLATKM 4464


>SPCC777.14 |prp4||serine/threonine protein kinase
           Prp4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 477

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +3

Query: 63  TIPSEERKGVTESLSMTKPLESLP 134
           +IP ++ K   + +S TKP+E++P
Sbjct: 37  SIPEKKLKEDVDQVSTTKPIEAVP 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,997,499
Number of Sequences: 5004
Number of extensions: 35871
Number of successful extensions: 79
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)