Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_K12
         (547 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21317-6|AAA62527.1|  313|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AF026215-5|AAB71321.2|  509|Caenorhabditis elegans Hypothetical ...    28   5.0  
Z92804-2|CAB07253.2|  321|Caenorhabditis elegans Hypothetical pr...    27   8.8  
AF022981-10|AAG24203.1|  360|Caenorhabditis elegans Serpentine r...    27   8.8  

>U21317-6|AAA62527.1|  313|Caenorhabditis elegans Hypothetical
           protein B0495.8a protein.
          Length = 313

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 20  RDRKGLLKENCESRDNTLRRTERGHREFEYD 112
           RDR    ++   SRD + RR +RG R ++ D
Sbjct: 272 RDRDRRNRDRSRSRDRSYRRDDRGDRRYDRD 302


>AF026215-5|AAB71321.2|  509|Caenorhabditis elegans Hypothetical
           protein F09G2.3 protein.
          Length = 509

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 542 IDIITSLILFLINLHRFQLCLLFQYVVNFLYLFL 441
           +D++T+ +   INL  F+ C L+  +V     FL
Sbjct: 6   LDVVTTTLASAINLEDFRHCFLWALIVGICLAFL 39


>Z92804-2|CAB07253.2|  321|Caenorhabditis elegans Hypothetical
           protein K05D4.3 protein.
          Length = 321

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -1

Query: 457 FCIYFSHFKVNPLKVTHLT-NDIYYCKYTYYI 365
           FCI F     N LK+TH T N I +  Y Y++
Sbjct: 131 FCICFHPRSENYLKITHGTLNWIVFIGYAYFL 162


>AF022981-10|AAG24203.1|  360|Caenorhabditis elegans Serpentine
          receptor, class h protein82 protein.
          Length = 360

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 89 PFPFFGGYCLLIRSS 45
          PF  FGGYC+L +S+
Sbjct: 41 PFYIFGGYCILFKST 55


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,816,755
Number of Sequences: 27780
Number of extensions: 195080
Number of successful extensions: 532
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)