Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_K11
         (368 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz...    38   7e-04
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    37   9e-04
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    27   0.70 
SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr...    26   1.6  
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    26   1.6  
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    26   2.1  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    25   2.8  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   3.7  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    25   3.7  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    25   3.7  
SPAPB17E12.10c |||SAM-dependent methyltransferase|Schizosaccharo...    25   3.7  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    24   6.5  
SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA methyltransfera...    24   8.6  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    24   8.6  

>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 218

 Score = 37.5 bits (83), Expect = 7e-04
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
 Frame = +1

Query: 247 RQREK-CFKCNRTGHFARDCKEEADR---CYRCNGTGAHS 354
           R R+K CF C + GH  +DC E  D    C+RC G+  HS
Sbjct: 73  RNRDKFCFACRQQGHIVQDCPEAKDNVSICFRC-GSKEHS 111



 Score = 26.2 bits (55), Expect = 1.6
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +1

Query: 259 KCFKCNRTGHFARDCKEEADRCYRCNG 339
           KCF C+  GH +  C++     Y   G
Sbjct: 125 KCFICHENGHLSGQCEQNPKGLYPKGG 151


>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 37.1 bits (82), Expect = 9e-04
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +1

Query: 247 RQREKCFKCNRTGHFARDCKEEADRCYRCNGTGAHSA 357
           R   +C+ C   GH AR+C  +   CY CN TG H A
Sbjct: 14  RPGPRCYNCGENGHQAREC-TKGSICYNCNQTG-HKA 48



 Score = 36.3 bits (80), Expect = 0.002
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +1

Query: 262 CFKCNRTGHFARDCKE--EADRCYRCNGTGAH 351
           C+ CN+TGH A +C E  +   CY C GT  H
Sbjct: 38  CYNCNQTGHKASECTEPQQEKTCYAC-GTAGH 68



 Score = 35.9 bits (79), Expect = 0.002
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +1

Query: 247 RQREKCFKCNRTGHFARDCK 306
           RQ  +C+KC R GH ARDC+
Sbjct: 80  RQGAECYKCGRVGHIARDCR 99



 Score = 35.1 bits (77), Expect = 0.004
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = +1

Query: 259 KCFKCNRTGHFARDCKEEAD--RCYRCNGTG 345
           KC+ C + GH + +C++ +D   CY+CN  G
Sbjct: 136 KCYSCGKIGHRSFECQQASDGQLCYKCNQPG 166



 Score = 33.9 bits (74), Expect = 0.008
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +1

Query: 238 GFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGAHS 354
           G +R    C+ C   GH ARDC     +CY C   G  S
Sbjct: 110 GGHRSNMNCYACGSYGHQARDCTMGV-KCYSCGKIGHRS 147



 Score = 32.3 bits (70), Expect = 0.025
 Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
 Frame = +1

Query: 247 RQREKCFKCNRTGHFARDC-----KEEADRCYRCNGTG 345
           +Q + C+ C   GH  RDC       +   CY+C   G
Sbjct: 55  QQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVG 92



 Score = 27.1 bits (57), Expect = 0.93
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 262 CFKCNRTGHFARDC 303
           C+KCN+ GH A +C
Sbjct: 159 CYKCNQPGHIAVNC 172


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 0.70
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +1

Query: 244 NRQREKCFKCNRTGHFARDCKEEA 315
           +RQ  KC +C RT + +++C+ +A
Sbjct: 492 SRQFAKCRRCRRTKYCSKECQHQA 515


>SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 220

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -3

Query: 174 FALFSHTGWNSFSIRCITC*ALRSLLY 94
           F  FS  GW  F I C+TC     +LY
Sbjct: 144 FTDFSLMGWILFGIWCLTCFLSSFILY 170


>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 262 CFKCNRTGHFARDCKEEADRCY 327
           C++C + GH+ + C   AD  Y
Sbjct: 185 CYRCGQKGHWIQACPTNADPNY 206


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
 Frame = +1

Query: 256 EKCFKCNRTGHFARDCKEEADR----CYRCNGTGAHSA 357
           +KC  C   GH A  C E   R    C  C+ T  H++
Sbjct: 125 KKCMNCGLLGHIAARCSEPRKRGPRVCRTCH-TDTHTS 161



 Score = 23.8 bits (49), Expect = 8.6
 Identities = 9/30 (30%), Positives = 11/30 (36%)
 Frame = +1

Query: 262 CFKCNRTGHFARDCKEEADRCYRCNGTGAH 351
           C  C   GH ++DC      C  C     H
Sbjct: 89  CHNCKGNGHISKDCPHVL--CTTCGAIDDH 116


>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1309

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -1

Query: 182  PSCLHFLAIPAGIHFRLDV*LVEH-LDHYCTDRS 84
            P  L FLA   G H+  ++  +EH LD++   R+
Sbjct: 983  PLLLRFLATTVGFHYLSEINFIEHELDNWYHHRN 1016


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = -2

Query: 343 RCHYICSNGQPPPCSRAQSARCGCT 269
           RC Y C  G    CS   +  C CT
Sbjct: 488 RCKYKCHLGSCGTCSETLTIPCRCT 512


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 262  CFKCNRTGHFARDCK 306
            C+KC +  H  R+CK
Sbjct: 1806 CYKCGKADHNLRECK 1820


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 262  CFKCNRTGHFARDCK 306
            C+KC +  H  R+CK
Sbjct: 1806 CYKCGKADHNLRECK 1820


>SPAPB17E12.10c |||SAM-dependent
           methyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 301

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = +1

Query: 241 FNRQREKCFKCNRTGHFARDCKEEADRCYRCNG 339
           F      CFKC +   F    K+E    Y C+G
Sbjct: 257 FAEDLSMCFKCVKKIQFKTKIKDELYAVYFCSG 289


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +1

Query: 262 CFKCNRTGHFARDC 303
           C  C   GH ARDC
Sbjct: 336 CRHCGSIGHIARDC 349


>SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 548

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +1

Query: 232 DAGFNRQREKCFKCNRTGHFARDCKEEAD 318
           D      +E   KC+ T  F ++C E+ D
Sbjct: 87  DQNSELSQENLTKCDTTHDFEKNCSEKTD 115


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 6/32 (18%)
 Frame = +1

Query: 259 KCFKCNRTGHFARD------CKEEADRCYRCN 336
           KC  CN   HF  D      C+E+ +RCY C+
Sbjct: 246 KCEFCNT--HFYDDDELFKHCREKHERCYICD 275


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,410,133
Number of Sequences: 5004
Number of extensions: 24550
Number of successful extensions: 67
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)