Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_K11
(368 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical ... 43 8e-05
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 36 0.009
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 36 0.009
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 36 0.009
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 35 0.016
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 35 0.016
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 35 0.016
AC024780-4|AAF60572.3| 115|Caenorhabditis elegans Hypothetical ... 32 0.11
U80837-3|AAB37904.2| 384|Caenorhabditis elegans Hypothetical pr... 31 0.19
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 31 0.34
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 31 0.34
AF100656-7|AAF99964.2| 615|Caenorhabditis elegans Hypothetical ... 29 1.0
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 29 1.4
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 29 1.4
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 29 1.4
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 29 1.4
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 29 1.4
AC024849-2|AAK68549.3| 54|Caenorhabditis elegans Hypothetical ... 29 1.4
AC006672-5|AAM98003.1| 42|Caenorhabditis elegans Hypothetical ... 29 1.4
AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical ... 28 1.8
AF016670-8|AAB66101.1| 783|Caenorhabditis elegans Hypothetical ... 28 2.4
U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical pr... 27 3.2
L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle position... 27 4.2
AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane... 27 4.2
Z46828-2|CAA86857.1| 434|Caenorhabditis elegans Hypothetical pr... 27 5.5
Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical pr... 26 7.3
U58758-8|AAB93426.2| 379|Caenorhabditis elegans Hypothetical pr... 26 7.3
U50309-4|AAG24133.1| 267|Caenorhabditis elegans Hypothetical pr... 26 7.3
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 26 7.3
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 26 7.3
Z82055-8|CAB04850.2| 463|Caenorhabditis elegans Hypothetical pr... 26 9.7
>AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical
protein K08D12.3a protein.
Length = 151
Score = 42.7 bits (96), Expect = 8e-05
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Frame = +1
Query: 217 GVGARDAGFNRQREKCFKCNRTGHFARDCKE----EADRCYRCNGTG 345
G G F Q KC+ C R+GH +R+C E E RCY+C TG
Sbjct: 96 GRGGEGRSFGGQ--KCYNCGRSGHISRECTESGSAEEKRCYQCQETG 140
Score = 33.9 bits (74), Expect = 0.037
Identities = 22/75 (29%), Positives = 27/75 (36%), Gaps = 12/75 (16%)
Frame = +1
Query: 166 KCKQDGGTFXXXXXXXXGVGARDAGFNRQREKCFKCNRTGHFARDCKEEAD--------- 318
KC+Q G G R G C+ C TGHF+RDC +
Sbjct: 8 KCQQPGHISRNCPNGESDGGRRGGGGG---STCYNCQETGHFSRDCPKGGSGGGQRGGGG 64
Query: 319 ---RCYRCNGTGAHS 354
CY C G G +S
Sbjct: 65 GGGSCYNCGGRGHYS 79
Score = 31.9 bits (69), Expect = 0.15
Identities = 8/23 (34%), Positives = 16/23 (69%)
Frame = +1
Query: 250 QREKCFKCNRTGHFARDCKEEAD 318
+ ++C++C TGH +RDC + +
Sbjct: 129 EEKRCYQCQETGHISRDCPSQTN 151
Score = 29.1 bits (62), Expect = 1.0
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +1
Query: 262 CFKCNRTGHFARDCKE-EADRCYRCNGTGA 348
C+KC + GH +R+C E+D R G G+
Sbjct: 6 CYKCQQPGHISRNCPNGESDGGRRGGGGGS 35
Score = 27.5 bits (58), Expect = 3.2
Identities = 10/29 (34%), Positives = 13/29 (44%)
Frame = +1
Query: 217 GVGARDAGFNRQREKCFKCNRTGHFARDC 303
G G G C+ C GH++RDC
Sbjct: 54 GSGGGQRGGGGGGGSCYNCGGRGHYSRDC 82
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 35.9 bits (79), Expect = 0.009
Identities = 16/46 (34%), Positives = 19/46 (41%)
Frame = +1
Query: 217 GVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGAHS 354
G G G R KCF C GH + +C E C+ C G S
Sbjct: 229 GDGGFGGGEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRS 274
Score = 33.5 bits (73), Expect = 0.048
Identities = 22/69 (31%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Frame = +1
Query: 154 GMAKKCKQDGGTFXXXXXXXXGVGARDAGFNRQREKCFKCNRTGHFARDC----KEEADR 321
G A GG+F G G G + CF C + GH + DC KE R
Sbjct: 127 GSATGFGSGGGSFGGGNS---GFGEGGHGGGERNNNCFNCQQPGHRSSDCPEPRKEREPR 183
Query: 322 -CYRCNGTG 345
CY C G
Sbjct: 184 VCYNCQQPG 192
Score = 29.1 bits (62), Expect = 1.0
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +1
Query: 247 RQREKCFKCNRTGHFARDCKEE 312
R+ C+ C + GH +R+C EE
Sbjct: 180 REPRVCYNCQQPGHTSRECTEE 201
Score = 25.8 bits (54), Expect = 9.7
Identities = 11/33 (33%), Positives = 13/33 (39%)
Frame = +1
Query: 217 GVGARDAGFNRQREKCFKCNRTGHFARDCKEEA 315
G G R A CF C GH + +C A
Sbjct: 249 GEGHRSAECPEPPRGCFNCGEQGHRSNECPNPA 281
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 35.9 bits (79), Expect = 0.009
Identities = 16/46 (34%), Positives = 19/46 (41%)
Frame = +1
Query: 217 GVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGAHS 354
G G G R KCF C GH + +C E C+ C G S
Sbjct: 229 GDGGFGGGEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRS 274
Score = 33.5 bits (73), Expect = 0.048
Identities = 22/69 (31%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Frame = +1
Query: 154 GMAKKCKQDGGTFXXXXXXXXGVGARDAGFNRQREKCFKCNRTGHFARDC----KEEADR 321
G A GG+F G G G + CF C + GH + DC KE R
Sbjct: 127 GSATGFGSGGGSFGGGNS---GFGEGGHGGGERNNNCFNCQQPGHRSSDCPEPRKEREPR 183
Query: 322 -CYRCNGTG 345
CY C G
Sbjct: 184 VCYNCQQPG 192
Score = 29.1 bits (62), Expect = 1.0
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +1
Query: 247 RQREKCFKCNRTGHFARDCKEE 312
R+ C+ C + GH +R+C EE
Sbjct: 180 REPRVCYNCQQPGHTSRECTEE 201
Score = 25.8 bits (54), Expect = 9.7
Identities = 11/33 (33%), Positives = 13/33 (39%)
Frame = +1
Query: 217 GVGARDAGFNRQREKCFKCNRTGHFARDCKEEA 315
G G R A CF C GH + +C A
Sbjct: 249 GEGHRSAECPEPPRGCFNCGEQGHRSNECPNPA 281
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 35.9 bits (79), Expect = 0.009
Identities = 16/46 (34%), Positives = 19/46 (41%)
Frame = +1
Query: 217 GVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGAHS 354
G G G R KCF C GH + +C E C+ C G S
Sbjct: 229 GDGGFGGGEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRS 274
Score = 33.5 bits (73), Expect = 0.048
Identities = 22/69 (31%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Frame = +1
Query: 154 GMAKKCKQDGGTFXXXXXXXXGVGARDAGFNRQREKCFKCNRTGHFARDC----KEEADR 321
G A GG+F G G G + CF C + GH + DC KE R
Sbjct: 127 GSATGFGSGGGSFGGGNS---GFGEGGHGGGERNNNCFNCQQPGHRSSDCPEPRKEREPR 183
Query: 322 -CYRCNGTG 345
CY C G
Sbjct: 184 VCYNCQQPG 192
Score = 29.1 bits (62), Expect = 1.0
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +1
Query: 247 RQREKCFKCNRTGHFARDCKEE 312
R+ C+ C + GH +R+C EE
Sbjct: 180 REPRVCYNCQQPGHTSRECTEE 201
Score = 25.8 bits (54), Expect = 9.7
Identities = 11/33 (33%), Positives = 13/33 (39%)
Frame = +1
Query: 217 GVGARDAGFNRQREKCFKCNRTGHFARDCKEEA 315
G G R A CF C GH + +C A
Sbjct: 249 GEGHRSAECPEPPRGCFNCGEQGHRSNECPNPA 281
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 35.1 bits (77), Expect = 0.016
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Frame = +1
Query: 181 GGTFXXXXXXXXGVGARDAGFNR--QREKCFKCNRTGHFARDC----KEEADR-CYRCNG 339
GG+ G G+ G +R + CF C + GH + DC KE R CY C
Sbjct: 230 GGSGFGSGGNSNGFGSGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQ 289
Query: 340 TGAHS 354
G +S
Sbjct: 290 PGHNS 294
Score = 35.1 bits (77), Expect = 0.016
Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
Frame = +1
Query: 181 GGTFXXXXXXXXGVGARDAGFNRQREKCFKCNRTGHFARDC----KEEADR-CYRCNGTG 345
GG G G +D G + CF C + GH + DC KE R CY C G
Sbjct: 348 GGFGGNSNGFGSGGGGQDRG--ERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPG 405
Query: 346 AHS 354
+S
Sbjct: 406 HNS 408
Score = 35.1 bits (77), Expect = 0.016
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Frame = +1
Query: 217 GVGARDAGFNRQRE--KCFKCNRTGHFARDCKEEADRCYRCNGTGAHS 354
G A G N +R KCF C GH + +C E C+ C G S
Sbjct: 438 GGNAEGFGNNEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRS 485
Score = 30.7 bits (66), Expect = 0.34
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +1
Query: 247 RQREKCFKCNRTGHFARDCKEEADRCYRCNG-TGAHS 354
R+ C+ C + GH +RDC EE NG TG S
Sbjct: 279 REPRVCYNCQQPGHNSRDCPEERKPREGRNGFTGGSS 315
Score = 30.3 bits (65), Expect = 0.45
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 247 RQREKCFKCNRTGHFARDCKEE 312
R+ C+ C + GH +RDC EE
Sbjct: 393 REPRVCYNCQQPGHNSRDCPEE 414
Score = 26.2 bits (55), Expect = 7.3
Identities = 13/43 (30%), Positives = 15/43 (34%)
Frame = +1
Query: 217 GVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTG 345
G G R A CF C GH + +C A G G
Sbjct: 460 GEGHRSAECPEPPRGCFNCGEQGHRSNECPNPAKPREGAEGEG 502
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 35.1 bits (77), Expect = 0.016
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Frame = +1
Query: 181 GGTFXXXXXXXXGVGARDAGFNR--QREKCFKCNRTGHFARDC----KEEADR-CYRCNG 339
GG+ G G+ G +R + CF C + GH + DC KE R CY C
Sbjct: 230 GGSGFGSGGNSNGFGSGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQ 289
Query: 340 TGAHS 354
G +S
Sbjct: 290 PGHNS 294
Score = 35.1 bits (77), Expect = 0.016
Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
Frame = +1
Query: 181 GGTFXXXXXXXXGVGARDAGFNRQREKCFKCNRTGHFARDC----KEEADR-CYRCNGTG 345
GG G G +D G + CF C + GH + DC KE R CY C G
Sbjct: 348 GGFGGNSNGFGSGGGGQDRG--ERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPG 405
Query: 346 AHS 354
+S
Sbjct: 406 HNS 408
Score = 35.1 bits (77), Expect = 0.016
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Frame = +1
Query: 217 GVGARDAGFNRQRE--KCFKCNRTGHFARDCKEEADRCYRCNGTGAHS 354
G A G N +R KCF C GH + +C E C+ C G S
Sbjct: 438 GGNAEGFGNNEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRS 485
Score = 30.7 bits (66), Expect = 0.34
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +1
Query: 247 RQREKCFKCNRTGHFARDCKEEADRCYRCNG-TGAHS 354
R+ C+ C + GH +RDC EE NG TG S
Sbjct: 279 REPRVCYNCQQPGHNSRDCPEERKPREGRNGFTGGSS 315
Score = 30.3 bits (65), Expect = 0.45
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 247 RQREKCFKCNRTGHFARDCKEE 312
R+ C+ C + GH +RDC EE
Sbjct: 393 REPRVCYNCQQPGHNSRDCPEE 414
Score = 26.2 bits (55), Expect = 7.3
Identities = 13/43 (30%), Positives = 15/43 (34%)
Frame = +1
Query: 217 GVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTG 345
G G R A CF C GH + +C A G G
Sbjct: 460 GEGHRSAECPEPPRGCFNCGEQGHRSNECPNPAKPREGAEGEG 502
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 35.1 bits (77), Expect = 0.016
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Frame = +1
Query: 181 GGTFXXXXXXXXGVGARDAGFNR--QREKCFKCNRTGHFARDC----KEEADR-CYRCNG 339
GG+ G G+ G +R + CF C + GH + DC KE R CY C
Sbjct: 230 GGSGFGSGGNSNGFGSGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQ 289
Query: 340 TGAHS 354
G +S
Sbjct: 290 PGHNS 294
Score = 35.1 bits (77), Expect = 0.016
Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
Frame = +1
Query: 181 GGTFXXXXXXXXGVGARDAGFNRQREKCFKCNRTGHFARDC----KEEADR-CYRCNGTG 345
GG G G +D G + CF C + GH + DC KE R CY C G
Sbjct: 348 GGFGGNSNGFGSGGGGQDRG--ERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPG 405
Query: 346 AHS 354
+S
Sbjct: 406 HNS 408
Score = 35.1 bits (77), Expect = 0.016
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Frame = +1
Query: 217 GVGARDAGFNRQRE--KCFKCNRTGHFARDCKEEADRCYRCNGTGAHS 354
G A G N +R KCF C GH + +C E C+ C G S
Sbjct: 438 GGNAEGFGNNEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRS 485
Score = 30.7 bits (66), Expect = 0.34
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +1
Query: 247 RQREKCFKCNRTGHFARDCKEEADRCYRCNG-TGAHS 354
R+ C+ C + GH +RDC EE NG TG S
Sbjct: 279 REPRVCYNCQQPGHNSRDCPEERKPREGRNGFTGGSS 315
Score = 30.3 bits (65), Expect = 0.45
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 247 RQREKCFKCNRTGHFARDCKEE 312
R+ C+ C + GH +RDC EE
Sbjct: 393 REPRVCYNCQQPGHNSRDCPEE 414
Score = 26.2 bits (55), Expect = 7.3
Identities = 13/43 (30%), Positives = 15/43 (34%)
Frame = +1
Query: 217 GVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTG 345
G G R A CF C GH + +C A G G
Sbjct: 460 GEGHRSAECPEPPRGCFNCGEQGHRSNECPNPAKPREGAEGEG 502
>AC024780-4|AAF60572.3| 115|Caenorhabditis elegans Hypothetical
protein Y43B11AR.1 protein.
Length = 115
Score = 32.3 bits (70), Expect = 0.11
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -3
Query: 327 VATVSLLLAVARKVPGAVALEALFPLPVEASVAGAYA 217
VAT+S++ AV + A A+ P PVE +V GA A
Sbjct: 10 VATISMIFAVVKAEDAAPAVVEASPAPVEPAVTGAVA 46
>U80837-3|AAB37904.2| 384|Caenorhabditis elegans Hypothetical
protein F07E5.5 protein.
Length = 384
Score = 31.5 bits (68), Expect = 0.19
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Frame = +1
Query: 262 CFKCNRTGHFARDCKEEADRCYR----CNGTGAHS 354
CF C + GH +RDC + + Y CN GA++
Sbjct: 282 CFVCKQVGHISRDCHQNVNGVYPDGGCCNVCGANT 316
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 30.7 bits (66), Expect = 0.34
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 6/37 (16%)
Frame = +1
Query: 253 REKCFKCNRTGHFARDCKEEADR------CYRCNGTG 345
R C C + GHFA+DC+ E R C RC G
Sbjct: 638 RGPCRNCGQEGHFAKDCQNERVRMEPTEPCRRCAEEG 674
Score = 26.2 bits (55), Expect = 7.3
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +1
Query: 253 REKCFKCNRTGHFARDCKE 309
R C C + GHFA DC +
Sbjct: 592 RFPCRNCEQLGHFASDCDQ 610
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 30.7 bits (66), Expect = 0.34
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 6/37 (16%)
Frame = +1
Query: 253 REKCFKCNRTGHFARDCKEEADR------CYRCNGTG 345
R C C + GHFA+DC+ E R C RC G
Sbjct: 638 RGPCRNCGQEGHFAKDCQNERVRMEPTEPCRRCAEEG 674
Score = 26.2 bits (55), Expect = 7.3
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +1
Query: 253 REKCFKCNRTGHFARDCKE 309
R C C + GHFA DC +
Sbjct: 592 RFPCRNCEQLGHFASDCDQ 610
>AF100656-7|AAF99964.2| 615|Caenorhabditis elegans Hypothetical
protein F49F1.8 protein.
Length = 615
Score = 29.1 bits (62), Expect = 1.0
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 247 RQREKCFKCNRTGHFARDCKEEA 315
R + +C C GH AR+CK++A
Sbjct: 571 RFKGQCHYCKNVGHMARNCKKKA 593
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 28.7 bits (61), Expect = 1.4
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 241 FNRQREKCFKCNRTGHFARDCKEE 312
F + CF+CN GH A +C ++
Sbjct: 670 FKLKNRACFRCNEMGHIAWNCPKK 693
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 28.7 bits (61), Expect = 1.4
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 241 FNRQREKCFKCNRTGHFARDCKEE 312
F + CF+CN GH A +C ++
Sbjct: 573 FKLKNRACFRCNEMGHIAWNCPKK 596
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 28.7 bits (61), Expect = 1.4
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 241 FNRQREKCFKCNRTGHFARDCKEE 312
F + CF+CN GH A +C ++
Sbjct: 584 FKLKNRACFRCNEMGHIAWNCPKK 607
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 28.7 bits (61), Expect = 1.4
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +1
Query: 262 CFKCNRTGHFARDCKEEADRCYRCNGTGAHSA 357
CF C + GH A +C C C G H A
Sbjct: 204 CFNCKKYGHRATECSAPQRECANC-GDPNHRA 234
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 28.7 bits (61), Expect = 1.4
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +1
Query: 262 CFKCNRTGHFARDCKEEADRCYRCNGTGAHSA 357
CF C + GH A +C C C G H A
Sbjct: 204 CFNCKKYGHRATECSAPQRECANC-GDPNHRA 234
>AC024849-2|AAK68549.3| 54|Caenorhabditis elegans Hypothetical
protein Y67D8B.4 protein.
Length = 54
Score = 28.7 bits (61), Expect = 1.4
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +3
Query: 135 SKMNSSRYG*KVQTGRGHFRPGECTAKWR 221
SKMN S G + +GRG FRPG + WR
Sbjct: 12 SKMNPS--GGALVSGRGGFRPGFVSRDWR 38
>AC006672-5|AAM98003.1| 42|Caenorhabditis elegans Hypothetical
protein K08D12.3b protein.
Length = 42
Score = 28.7 bits (61), Expect = 1.4
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +1
Query: 262 CFKCNRTGHFARDCKE-EADRCYRCNGTG 345
C+KC + GH +R+C E+D R G G
Sbjct: 6 CYKCQQPGHISRNCPNGESDGGRRGGGGG 34
>AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical
protein F54G2.2 protein.
Length = 1023
Score = 28.3 bits (60), Expect = 1.8
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +1
Query: 106 SKCSTSYTSNRK*IPA-GMAKKCKQDGGTFXXXXXXXXGVGARDAGFNRQREKCFKCNRT 282
+K S +S++ +P G+ +CKQ GG + + R +CF C
Sbjct: 562 NKKSLQTSSDQVNVPENGICAECKQVGG-----HEPSCSLAPKTWKRERPPPQCFTCGEM 616
Query: 283 GHFARDCKEEADR 321
GH + C + DR
Sbjct: 617 GHISTYCPKRIDR 629
>AF016670-8|AAB66101.1| 783|Caenorhabditis elegans Hypothetical
protein K02F6.1 protein.
Length = 783
Score = 27.9 bits (59), Expect = 2.4
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +1
Query: 262 CFKCNRTGHFARDCKEEADRCYRCNGTGAHS 354
C+KC GH ++DC + + N HS
Sbjct: 313 CYKCKVVGHVSKDCPQSSTNSGVTNRKTEHS 343
>U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical protein
K10D2.3 protein.
Length = 1425
Score = 27.5 bits (58), Expect = 3.2
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +1
Query: 259 KCFKCNRTGHFARDCKEEA 315
+C +C+R GHF C + A
Sbjct: 1356 QCHQCHRIGHFVESCPQRA 1374
>L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle positioning
protein 4 protein.
Length = 2104
Score = 27.1 bits (57), Expect = 4.2
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -2
Query: 205 HSPGRKCPRPVCT 167
H PGRKC P+C+
Sbjct: 1009 HRPGRKCVEPICS 1021
>AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane
matrix receptor MUP-4 protein.
Length = 2104
Score = 27.1 bits (57), Expect = 4.2
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -2
Query: 205 HSPGRKCPRPVCT 167
H PGRKC P+C+
Sbjct: 1009 HRPGRKCVEPICS 1021
>Z46828-2|CAA86857.1| 434|Caenorhabditis elegans Hypothetical
protein R03D7.4 protein.
Length = 434
Score = 26.6 bits (56), Expect = 5.5
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -3
Query: 273 ALEALFPLPVEASVAGAYATWRCTRRGESAPVL 175
AL+ L+ L V V + T++C +R ES+P L
Sbjct: 25 ALKRLYDLNVSPEVFKSADTYQCVKRYESSPEL 57
>Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical
protein F11A10.8 protein.
Length = 302
Score = 26.2 bits (55), Expect = 7.3
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +1
Query: 262 CFKCNRTGHFARDCKEEA 315
C+KC GH+A C + A
Sbjct: 252 CYKCGEKGHYANRCHKGA 269
>U58758-8|AAB93426.2| 379|Caenorhabditis elegans Hypothetical
protein ZK1127.5 protein.
Length = 379
Score = 26.2 bits (55), Expect = 7.3
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -3
Query: 312 LLLAVARKVPGAVALEALFPLPVEASVAGAYATW 211
LLL+ KVP + L+ + P E SV G A+W
Sbjct: 101 LLLSPFCKVPMVIKLKGVTNAPGEISVDGMKASW 134
>U50309-4|AAG24133.1| 267|Caenorhabditis elegans Hypothetical
protein F58G4.4 protein.
Length = 267
Score = 26.2 bits (55), Expect = 7.3
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -2
Query: 352 YVPRCHYICSNGQPPPCSRAQSARCGC 272
Y P+C Y C++G+ CSR + + C
Sbjct: 136 YGPKCQYYCTSGE--KCSRDECPKRKC 160
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 26.2 bits (55), Expect = 7.3
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +1
Query: 259 KCFKCNRTGHFARDCK 306
KC C GH ++DCK
Sbjct: 454 KCTNCGAFGHISKDCK 469
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 26.2 bits (55), Expect = 7.3
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +1
Query: 259 KCFKCNRTGHFARDCK 306
KC C GH ++DCK
Sbjct: 454 KCTNCGAFGHISKDCK 469
>Z82055-8|CAB04850.2| 463|Caenorhabditis elegans Hypothetical
protein T26H2.9 protein.
Length = 463
Score = 25.8 bits (54), Expect = 9.7
Identities = 20/48 (41%), Positives = 22/48 (45%), Gaps = 14/48 (29%)
Frame = +1
Query: 253 REKCFKC---NRTG-HF-ARDCKEEA---------DRCYRCNGTGAHS 354
R KC C N T HF A+ CK A D+CY C G G HS
Sbjct: 3 RGKCMVCDSPNATNYHFGAQSCKACAAFFRRSIAMDQCYECLGDGVHS 50
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,476,527
Number of Sequences: 27780
Number of extensions: 158256
Number of successful extensions: 513
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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