Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_K09
(561 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0955 + 21789616-21789778,21791622-21791688,21792285-217923... 33 0.21
08_02_0969 - 23126389-23126670,23126764-23126947,23127017-231278... 32 0.36
06_01_0833 - 6288410-6288564,6289948-6290239,6290578-6290670,629... 30 1.1
03_02_0671 + 10315260-10315370,10315984-10316027,10316141-103162... 30 1.1
05_03_0134 + 8790409-8790421,8790716-8791023,8791836-8792153,879... 29 1.9
05_03_0653 + 16617121-16617359,16618892-16618955,16619455-166194... 29 3.4
03_01_0311 + 2453057-2454610 28 5.9
06_02_0248 + 13468100-13468336,13468426-13468569,13469044-134698... 27 7.7
>10_08_0955 +
21789616-21789778,21791622-21791688,21792285-21792346,
21792508-21792729,21792993-21793102,21793195-21793236,
21793271-21793303
Length = 232
Score = 32.7 bits (71), Expect = 0.21
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +2
Query: 50 VAAATDVLPCPNGPSKDLSDAVHLSPCKGVPCRL 151
+AAA LP P G + +SD H+ P KG C+L
Sbjct: 34 LAAAGGKLPAPLGKAGKVSDGAHVEPKKGHNCKL 67
>08_02_0969 -
23126389-23126670,23126764-23126947,23127017-23127834,
23127953-23128642
Length = 657
Score = 31.9 bits (69), Expect = 0.36
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Frame = +2
Query: 62 TDVLPCPNGPSKDLSDAVHLSPCKGVPCRLKKGTNQHIKINFTPDTDIPDLTNSVVAE-- 235
T P P G + S + P G+P L+ N ++ TP I LT VV++
Sbjct: 567 TPAPPSPAGEGRRRSPRLAAKPLAGLPMSLRAQLNLCRRMGLTPPEGI--LTEKVVSDFK 624
Query: 236 -VFGVPLPFVGVDGV 277
+F PLP +D +
Sbjct: 625 AMFNAPLPQDAIDAL 639
>06_01_0833 -
6288410-6288564,6289948-6290239,6290578-6290670,
6290784-6290857,6290976-6291045,6291140-6291217,
6291329-6291430,6291583-6291645,6291802-6291951,
6292037-6292180,6292266-6292499
Length = 484
Score = 30.3 bits (65), Expect = 1.1
Identities = 27/74 (36%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = +2
Query: 2 AAGIRHEAVIYLSIV-AVAAATDVL-PCPNGPSKDLSDAVHLSPCKGVPCRLKKGTNQHI 175
A+G V+ L +V V A D L C PS LS A SPC GVPC + I
Sbjct: 393 ASGFVELLVLALHVVRCVLAILDRLHACLMSPSLQLSIA---SPCHGVPCSIGAVEASAI 449
Query: 176 KINFTPDTDIPDLT 217
++ P+ I LT
Sbjct: 450 IVSDAPEGLISTLT 463
>03_02_0671 +
10315260-10315370,10315984-10316027,10316141-10316204,
10316278-10316392,10316504-10316571,10316917-10317014,
10317543-10317657,10318425-10318641,10319541-10319667,
10319803-10319857,10319997-10320093,10320748-10320876,
10320964-10321097,10321660-10321746,10321998-10322069,
10322320-10322359,10322535-10322779,10323587-10323764,
10323931-10324136,10324681-10324977
Length = 832
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 200 DIPDLTNSVVAEVFGVPLPFVGVDGVSIC-DKVYTADEK 313
D P L+ ++ A+ F LP +G S+C +K +TA EK
Sbjct: 703 DAPRLSQAIFADYFNYYLPKMGTSLESVCYEKEFTAKEK 741
>05_03_0134 +
8790409-8790421,8790716-8791023,8791836-8792153,
8793021-8793212,8793383-8793618,8793696-8793953,
8794237-8794315,8797728-8797895
Length = 523
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +2
Query: 212 LTNSVVAEVFGVPLPFVGVDGVSICDKVYTADEKKTSCPLKA 337
L N V AEV P+ ++ +S + YT DEKK +KA
Sbjct: 356 LMNYVEAEVMRKPVGYLNPCRISKSNHTYTLDEKKLPAHIKA 397
>05_03_0653 + 16617121-16617359,16618892-16618955,16619455-16619485,
16619577-16619848,16620528-16620633,16620715-16620872,
16621527-16621714,16621786-16621855,16622814-16622984,
16624363-16624838,16625625-16625871,16626158-16626490,
16627329-16627412,16627751-16627843,16627966-16628025,
16628582-16628680,16628830-16628970,16629207-16629287,
16629895-16629966,16631160-16631231,16632083-16632176,
16632257-16632339,16632455-16632532,16632914-16632970,
16633055-16633132,16633236-16633357,16633463-16633623,
16634419-16634495,16634570-16634683,16634857-16634958,
16635368-16635436,16635437-16635577,16635936-16636109,
16636934-16637063,16637137-16637276,16637369-16637446,
16637813-16637911,16638408-16638803
Length = 1749
Score = 28.7 bits (61), Expect = 3.4
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = -1
Query: 477 SNYTILAGIWKHIKLSDLFFNDQITFTSI 391
S YTI+ +W+H+K+ F+D + +S+
Sbjct: 1589 SFYTIIETMWEHLKIGHFPFSDSLFLSSL 1617
>03_01_0311 + 2453057-2454610
Length = 517
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/46 (32%), Positives = 19/46 (41%)
Frame = -3
Query: 289 IANRDAIYTDEGQRYTKHFGYNAIRQIRYVCVWCKVDFNVLVGAFF 152
+ N D + DEG T HFG + I R C D + A F
Sbjct: 143 VDNADGAFADEGWYATDHFGLDVIFHSRIKQYECLTDDSSRAAAVF 188
>06_02_0248 +
13468100-13468336,13468426-13468569,13469044-13469808,
13470272-13470564,13470642-13470833,13471151-13471229,
13471339-13471431,13471519-13471704
Length = 662
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +2
Query: 212 LTNSVVAEVFGVPLPFVGVDGVSICDKVYTADEKKTSCPLKA 337
L N V AE P+ ++ +S ++ YT DEKK +KA
Sbjct: 480 LMNYVEAEAMKKPVAYLNPCRISKSNQTYTLDEKKLPEHIKA 521
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,511,140
Number of Sequences: 37544
Number of extensions: 262623
Number of successful extensions: 695
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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