Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_K09
         (561 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025467-10|AAB71040.2|  154|Caenorhabditis elegans He1 homologu...    44   8e-05
AL031635-4|CAA21043.2|  269|Caenorhabditis elegans Hypothetical ...    31   0.57 
Z81110-1|CAB03258.2|  322|Caenorhabditis elegans Hypothetical pr...    28   4.0  
AF370362-1|AAK52515.1|  322|Caenorhabditis elegans putative tran...    28   4.0  
U28409-2|AAN60501.1|  288|Caenorhabditis elegans Hypothetical pr...    27   7.0  
AF100655-2|AAK68684.2|  366|Caenorhabditis elegans Map kinase ac...    27   7.0  
AF100655-1|AAC68944.1|  443|Caenorhabditis elegans Map kinase ac...    27   7.0  

>AF025467-10|AAB71040.2|  154|Caenorhabditis elegans He1 homologue
           protein 1 protein.
          Length = 154

 Score = 44.0 bits (99), Expect = 8e-05
 Identities = 47/158 (29%), Positives = 69/158 (43%), Gaps = 9/158 (5%)
 Frame = +2

Query: 20  EAVIYLSIVAVAAAT------DVLPCPNGPSKDLSDAVHLSPCKGVP-CRLKKGTNQHIK 178
           + VI+L+++ +AAA        V       S+  +D   L+   G   C  KKG+   I+
Sbjct: 2   KTVIFLALLGLAAAEFIEIGYKVCKSDGTVSQVKADGCELTVKDGKKVCLFKKGSRPIIQ 61

Query: 179 INFTPDTDIPDLTNSVVAEVFGVPLPFVGVDGVSICDKVYTADEKKTSCPLKAGEKYIYE 358
           I F P  D   L  SV A+V G  +    VD         T   K   CP+ AGE  I+E
Sbjct: 62  IAFKPSKDTDKLKTSVRAKVGGSAM----VDFPQTNSDACTYGVK---CPVSAGENQIFE 114

Query: 359 DSFPVLSFYPSIDV-KVIWSL-KNKSDNLICFQMPARI 466
            S  +   +P+ +V +V W L +  S   +C    A I
Sbjct: 115 QSISITENHPAGEVIQVNWQLTRPDSGKEVCIIFLAEI 152


>AL031635-4|CAA21043.2|  269|Caenorhabditis elegans Hypothetical
           protein Y47D3B.6 protein.
          Length = 269

 Score = 31.1 bits (67), Expect = 0.57
 Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
 Frame = +2

Query: 2   AAGIRHEAVIYLSIVAVAAATDVLPCPNGPSKDLSDAVHLSPCK-GVPCRLKKGTNQHIK 178
           A    + AV+Y  ++    A  V P P    + +  A+  SPC+ GV C    G+   + 
Sbjct: 125 ACACANPAVVYSPVIGCQPAIPVAPAPVVAGRLIPQALPGSPCEPGVEC--TGGSVCSVG 182

Query: 179 INFTPDTDIPDLTNSVVAEVFG-VPLPFVGV 268
           +   P   I + T  V   ++G VP P + V
Sbjct: 183 VCLCPPELIQEGTVCVARTIYGVVPPPVIPV 213


>Z81110-1|CAB03258.2|  322|Caenorhabditis elegans Hypothetical
           protein T01D3.2 protein.
          Length = 322

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 489 NIDSSNYTILAGIWKHIKLSDLFFNDQITFTS 394
           N  S  + + + I++H  +S   FND ITF S
Sbjct: 288 NQTSETFYVESNIFRHTSISSKQFNDSITFVS 319


>AF370362-1|AAK52515.1|  322|Caenorhabditis elegans putative
           transcription factor T01D3.2protein.
          Length = 322

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 489 NIDSSNYTILAGIWKHIKLSDLFFNDQITFTS 394
           N  S  + + + I++H  +S   FND ITF S
Sbjct: 288 NQTSETFYVESNIFRHTSISSKQFNDSITFVS 319


>U28409-2|AAN60501.1|  288|Caenorhabditis elegans Hypothetical
           protein T25D10.5 protein.
          Length = 288

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 21/90 (23%), Positives = 34/90 (37%)
 Frame = +2

Query: 128 CKGVPCRLKKGTNQHIKINFTPDTDIPDLTNSVVAEVFGVPLPFVGVDGVSICDKVYTAD 307
           C G+   L        K  F  +    +L    V  +FG   P      V   D  ++ D
Sbjct: 27  CGGINVSLFVSETTSNKYRFEWELKWDELKKKGVKHLFGTITPETNDKLVPSID--FSVD 84

Query: 308 EKKTSCPLKAGEKYIYEDSFPVLSFYPSID 397
           EK+++  L+  + ++Y   F    FY   D
Sbjct: 85  EKRSTSNLETSKDWLYNIPFKYKIFYKESD 114


>AF100655-2|AAK68684.2|  366|Caenorhabditis elegans Map kinase
           activated protein kinaseprotein 2, isoform b protein.
          Length = 366

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 201 SVSGVKLILMCWLVPFLSRHGTPL 130
           S+  +  IL+C   PF S+HG P+
Sbjct: 199 SIGVIMYILLCGYPPFYSQHGQPM 222


>AF100655-1|AAC68944.1|  443|Caenorhabditis elegans Map kinase
           activated protein kinaseprotein 2, isoform a protein.
          Length = 443

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 201 SVSGVKLILMCWLVPFLSRHGTPL 130
           S+  +  IL+C   PF S+HG P+
Sbjct: 276 SIGVIMYILLCGYPPFYSQHGQPM 299


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,628,507
Number of Sequences: 27780
Number of extensions: 232678
Number of successful extensions: 569
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)