Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_K07
         (525 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    26   0.27 
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     26   0.27 
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    24   0.83 
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    24   1.1  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   2.5  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   3.3  
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              21   7.7  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              21   7.7  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.8 bits (54), Expect = 0.27
 Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +2

Query: 392 AHPDVEKQATAL-HEKLQTGIQNTLKESQNLAKEVGVNLDQTSQK 523
           A+PD+ + + A  H +L    +  LKE++ + +E+   LD++ Q+
Sbjct: 416 ANPDIFRVSCATEHSQLTNISEEVLKEAKIIQEEIRTLLDESIQR 460


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 25.8 bits (54), Expect = 0.27
 Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +2

Query: 392 AHPDVEKQATAL-HEKLQTGIQNTLKESQNLAKEVGVNLDQTSQK 523
           A+PD+ + + A  H +L    +  LKE++ + +E+   LD++ Q+
Sbjct: 122 ANPDIFRVSCATEHSQLTNISEEVLKEAKIIQEEIRTLLDESIQR 166


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 24.2 bits (50), Expect = 0.83
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +2

Query: 218 NTESLNKALKEGSDSMVQQVSELSNS 295
           NTESL K+  +G+D   ++V ++ +S
Sbjct: 278 NTESLMKSENQGNDVQYERVQDVFDS 303


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 402 SGCALRRSSTVRSKFWRACWSTSLALPFASVNAPCRLLD 286
           +GC L   +  ++K+ RAC + SL L   +     R+LD
Sbjct: 366 AGCDLTIDNLRKAKYLRACITESLRL-IPTTTCIARILD 403


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 431 EKLQTGIQNTLKESQNLAKEVGVNLDQT 514
           EKL TGI   L  S  L + +G  + QT
Sbjct: 221 EKLATGIYQRLSLSFKLQRNIGYFVFQT 248


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 250 RLRLHGAAGLRVIQQS 297
           RL++HG  GLRV   S
Sbjct: 564 RLKVHGIRGLRVADAS 579


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/43 (23%), Positives = 22/43 (51%)
 Frame = +2

Query: 365 ERTVEDLRKAHPDVEKQATALHEKLQTGIQNTLKESQNLAKEV 493
           ++TV+D+ + + DVE +    + +      N + ES N  + +
Sbjct: 41  QQTVDDINEVNFDVEDEKPQRYNECILKQFNIVDESGNFKENI 83


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/43 (23%), Positives = 22/43 (51%)
 Frame = +2

Query: 365 ERTVEDLRKAHPDVEKQATALHEKLQTGIQNTLKESQNLAKEV 493
           ++TV+D+ + + DVE +    + +      N + ES N  + +
Sbjct: 41  QQTVDDINEVNFDVEDEKPQRYNECILKQFNIVDESGNFKENI 83


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,187
Number of Sequences: 438
Number of extensions: 2470
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14722920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)