Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_K06
(311 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S... 75 2e-15
SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac... 72 2e-14
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb... 26 1.1
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 24 4.6
SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|ch... 24 6.1
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 23 8.1
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 23 8.1
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c... 23 8.1
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 23 8.1
>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
L37|Schizosaccharomyces pombe|chr 3|||Manual
Length = 91
Score = 75.4 bits (177), Expect = 2e-15
Identities = 36/67 (53%), Positives = 43/67 (64%)
Frame = +3
Query: 51 SYHIQKSKCAPCGYPAAQLRSYHWSVKAXXXXXXXXXXMRHLKIVRRRFRNGFKEGKLTP 230
S+HIQKS CA CGYPAA+ RSY+W KA M +LK V R F+NGF+ GK P
Sbjct: 26 SFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGTGRMSYLKKVHRSFKNGFRSGK--P 83
Query: 231 KKAVASS 251
AVA+S
Sbjct: 84 AAAVAAS 90
Score = 34.3 bits (75), Expect = 0.004
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +2
Query: 2 RRNKTHTLCRRCGRTSILPHSEIEMCA 82
R NK+HT+CRRCG+ S H + CA
Sbjct: 11 RHNKSHTICRRCGKRSF--HIQKSTCA 35
>SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein
L37|Schizosaccharomyces pombe|chr 1|||Manual
Length = 89
Score = 72.1 bits (169), Expect = 2e-14
Identities = 32/59 (54%), Positives = 38/59 (64%)
Frame = +3
Query: 51 SYHIQKSKCAPCGYPAAQLRSYHWSVKAXXXXXXXXXXMRHLKIVRRRFRNGFKEGKLT 227
S+HIQKS CA CGYPAA+ RSY+W KA M +LK V R F+NGF+ GK T
Sbjct: 26 SFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGTGRMSYLKKVHRSFKNGFRAGKPT 84
Score = 34.3 bits (75), Expect = 0.004
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +2
Query: 2 RRNKTHTLCRRCGRTSILPHSEIEMCA 82
R NK+HT+CRRCG+ S H + CA
Sbjct: 11 RHNKSHTICRRCGKRSF--HIQKSTCA 35
>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 440
Score = 26.2 bits (55), Expect = 1.1
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -3
Query: 126 LTNGMISIGLQDNHMAHISISECG 55
L N + IGL+D ++ H+++ E G
Sbjct: 164 LDNASLYIGLKDGNLLHVTVHETG 187
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 24.2 bits (50), Expect = 4.6
Identities = 8/29 (27%), Positives = 17/29 (58%)
Frame = -1
Query: 98 CRITTWRTFRFLNVVR*MFYHIFCIVYVS 12
CR+ + + +++ M Y +FC+ Y+S
Sbjct: 668 CRVLLFISTALFSII--MIYFVFCVFYIS 694
>SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 217
Score = 23.8 bits (49), Expect = 6.1
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -3
Query: 90 NHMAHISISECGKIDVLPHLLHSVCV 13
+H ++I + +++V PHLL CV
Sbjct: 56 SHSNDLAICQHNQLNVAPHLLKWTCV 81
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 23.4 bits (48), Expect = 8.1
Identities = 7/25 (28%), Positives = 17/25 (68%)
Frame = -1
Query: 239 GFFRCKFSFLETIAETPSDNFQVTH 165
GF RC+ +F+ ++ T ++ +V++
Sbjct: 1454 GFLRCQINFVRSVMTTKNEWIEVSN 1478
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 23.4 bits (48), Expect = 8.1
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = -2
Query: 208 KPLRKR-LLTIFK*RMRPVPVVFLRLALTD 122
K + KR LL +F+ RP+P++ L+L L D
Sbjct: 881 KTINKRELLKVFQ---RPIPLLLLQLFLVD 907
>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
catalytic subunit|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1018
Score = 23.4 bits (48), Expect = 8.1
Identities = 7/15 (46%), Positives = 9/15 (60%)
Frame = +2
Query: 182 CQKAFPQWFQGRKTY 226
C + P WF+ RK Y
Sbjct: 260 CSRQKPTWFKARKAY 274
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 23.4 bits (48), Expect = 8.1
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -3
Query: 99 LQDNHMAHISISECGKIDV 43
LQDN HIS S K+DV
Sbjct: 623 LQDNAEKHISKSNLEKVDV 641
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,142,205
Number of Sequences: 5004
Number of extensions: 19191
Number of successful extensions: 48
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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