Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_K06
         (311 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0089 + 633642-633644,633728-633863,635356-635457,635565-63...    76   5e-15
08_01_0195 + 1612938-1613003,1613026-1613161,1614624-1614725,161...    75   9e-15
02_05_1204 + 34936696-34936698,34936809-34936944,34937794-349378...    73   6e-14
07_01_1105 - 10173039-10173156,10173715-10173716,10174550-101745...    26   5.4  

>02_01_0089 +
           633642-633644,633728-633863,635356-635457,635565-635608
          Length = 94

 Score = 76.2 bits (179), Expect = 5e-15
 Identities = 32/68 (47%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
 Frame = +3

Query: 51  SYHIQKSKCAPCGYPAAQLRSYHWSVKAXXXXXXXXXXMRHLKIVRRRFRNGFKEG-KLT 227
           S+H+QKS C+ CGYPAA++R Y+WSVKA          MR+++ V RRF++ F+EG + T
Sbjct: 26  SFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTGTGRMRYMRHVPRRFKSNFREGTEAT 85

Query: 228 PKKAVASS 251
           P+K  A++
Sbjct: 86  PRKRAAAA 93



 Score = 35.5 bits (78), Expect = 0.009
 Identities = 17/27 (62%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 2  RRNKTHTLCRRCGRTSI-LPHSEIEMC 79
          RRNKTHTLC RCGR S  L  S    C
Sbjct: 11 RRNKTHTLCVRCGRRSFHLQKSTCSSC 37


>08_01_0195 +
           1612938-1613003,1613026-1613161,1614624-1614725,
           1614833-1614876
          Length = 115

 Score = 75.4 bits (177), Expect = 9e-15
 Identities = 32/66 (48%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
 Frame = +3

Query: 51  SYHIQKSKCAPCGYPAAQLRSYHWSVKAXXXXXXXXXXMRHLKIVRRRFRNGFKEG-KLT 227
           S+H+QKS C+ CGYPAA++R Y+WSVKA          MR+++ V RRF++ F+EG + T
Sbjct: 47  SFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTGTGRMRYMRHVPRRFKSNFREGTEAT 106

Query: 228 PKKAVA 245
           P+K  A
Sbjct: 107 PRKRAA 112



 Score = 35.5 bits (78), Expect = 0.009
 Identities = 17/27 (62%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 2   RRNKTHTLCRRCGRTSI-LPHSEIEMC 79
           RRNKTHTLC RCGR S  L  S    C
Sbjct: 32  RRNKTHTLCVRCGRRSFHLQKSTCSSC 58


>02_05_1204 +
           34936696-34936698,34936809-34936944,34937794-34937895,
           34938153-34938199
          Length = 95

 Score = 72.5 bits (170), Expect = 6e-14
 Identities = 31/68 (45%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
 Frame = +3

Query: 51  SYHIQKSKCAPCGYPAAQLRSYHWSVKAXXXXXXXXXXMRHLKIVRRRFRNGFKEG-KLT 227
           S+H+QKS C+ CGYPAA++R Y+WSVKA          MR+L+ V +RF++ F+EG +  
Sbjct: 26  SFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTGTGRMRYLRHVPKRFKSNFREGTEAA 85

Query: 228 PKKAVASS 251
           P+K  A++
Sbjct: 86  PRKKGAAA 93



 Score = 35.5 bits (78), Expect = 0.009
 Identities = 17/27 (62%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 2  RRNKTHTLCRRCGRTSI-LPHSEIEMC 79
          RRNKTHTLC RCGR S  L  S    C
Sbjct: 11 RRNKTHTLCVRCGRRSFHLQKSTCSSC 37


>07_01_1105 -
           10173039-10173156,10173715-10173716,10174550-10174584,
           10174696-10174765,10175163-10176707,10176770-10178062
          Length = 1020

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
 Frame = -3

Query: 102 GLQDNH---MAHISISECGKIDVLPH 34
           G++D H   + ++SI  CGK+ VLP+
Sbjct: 900 GVKDEHFPELKYLSIVRCGKLKVLPN 925


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,365,181
Number of Sequences: 37544
Number of extensions: 125264
Number of successful extensions: 327
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)