Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_K06
         (311 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83128-1|CAB05635.1|   92|Caenorhabditis elegans Hypothetical pr...    71   1e-13
Z77131-1|CAB00854.1|   91|Caenorhabditis elegans Hypothetical pr...    62   8e-11
AC006809-3|AAY86286.1|  558|Caenorhabditis elegans Hypothetical ...    28   1.6  

>Z83128-1|CAB05635.1|   92|Caenorhabditis elegans Hypothetical
           protein W01D2.1 protein.
          Length = 92

 Score = 71.3 bits (167), Expect = 1e-13
 Identities = 31/61 (50%), Positives = 39/61 (63%)
 Frame = +3

Query: 51  SYHIQKSKCAPCGYPAAQLRSYHWSVKAXXXXXXXXXXMRHLKIVRRRFRNGFKEGKLTP 230
           S+HIQK +CA CGYP A+ R+Y+W  K+           RHL+ V  RFRNGF+EG  TP
Sbjct: 26  SFHIQKKRCASCGYPDAKKRTYNWGAKSIRRRTTGTGRTRHLRDVNARFRNGFREG-TTP 84

Query: 231 K 233
           K
Sbjct: 85  K 85



 Score = 30.7 bits (66), Expect = 0.22
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +2

Query: 11 KTHTLCRRCGRTSILPHSEIEMCA 82
          K+HTLC+RCG++S   H + + CA
Sbjct: 14 KSHTLCKRCGKSSF--HIQKKRCA 35


>Z77131-1|CAB00854.1|   91|Caenorhabditis elegans Hypothetical
           protein C54C6.1 protein.
          Length = 91

 Score = 62.1 bits (144), Expect = 8e-11
 Identities = 28/61 (45%), Positives = 36/61 (59%)
 Frame = +3

Query: 51  SYHIQKSKCAPCGYPAAQLRSYHWSVKAXXXXXXXXXXMRHLKIVRRRFRNGFKEGKLTP 230
           S+HIQK +CA CGY  A+ R+Y+W  K+           RHL+ V  RFRNGF+    TP
Sbjct: 26  SFHIQKKRCASCGYQDAKKRTYNWGAKSIRRRTTGTGRTRHLRDVNARFRNGFR--GTTP 83

Query: 231 K 233
           K
Sbjct: 84  K 84



 Score = 30.7 bits (66), Expect = 0.22
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +2

Query: 11 KTHTLCRRCGRTSILPHSEIEMCA 82
          K+HTLC+RCG++S   H + + CA
Sbjct: 14 KSHTLCKRCGKSSF--HIQKKRCA 35


>AC006809-3|AAY86286.1|  558|Caenorhabditis elegans Hypothetical
           protein Y5H2A.4 protein.
          Length = 558

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 39  VEHLSYHIQKSKCAPCGYPAAQLR 110
           V+H SY +Q S+CAP    + Q++
Sbjct: 92  VQHQSYQVQTSQCAPACQQSCQMQ 115


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,380,575
Number of Sequences: 27780
Number of extensions: 109692
Number of successful extensions: 270
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 344570176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)