Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_K04
(545 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr... 27 2.4
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S... 27 2.4
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 4.2
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb... 25 5.5
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|... 25 5.5
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo... 25 7.3
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.6
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 25 9.6
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 9.6
SPBC713.10 |tim16||TIM23 translocase complex subunit Tim16|Schiz... 25 9.6
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb... 25 9.6
>SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr
3|||Manual
Length = 269
Score = 26.6 bits (56), Expect = 2.4
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = +1
Query: 235 EVQDYKHPVYKPESSTELTIPSSTQETTTKRQIRRRRPNHSYTSTSS 375
E+ K P+ + +S E T+P + R NHSY +T +
Sbjct: 23 EIDLEKGPLPEYDSEEESTLPPYSDHALVNNPPNTHRENHSYGTTDN 69
>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 26.6 bits (56), Expect = 2.4
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -3
Query: 195 YFLYTHCSSTSIKCGSISN 139
YF CSS IKCG +SN
Sbjct: 190 YFNSAPCSSFMIKCGHVSN 208
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 4.2
Identities = 24/109 (22%), Positives = 40/109 (36%), Gaps = 2/109 (1%)
Frame = +1
Query: 82 YHQASTESSRVKLERKRPAV--TYRPAFDXXXXXXXXXXXXADLKTKQVHSRLEVQDYKH 255
Y +T SS V + T+ +F ++KT S E++
Sbjct: 679 YSNVTTSSSTVSTPPPTTSFPSTFTTSFITSSSLSSIPNNSTEVKTASTSSGTEIKTAS- 737
Query: 256 PVYKPESSTELTIPSSTQETTTKRQIRRRRPNHSYTSTSSDISVTRRPY 402
SS+ P+S+ TTT R+ + S + SS IS + +
Sbjct: 738 -TSSGSSSSSSYTPASSTSTTTSSVSSRQSSSSSSFTPSSAISTAKSSF 785
>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 25.4 bits (53), Expect = 5.5
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 422 EVEDPLKSQRKNLNHKLNRRHQQLEIHLTQDIV 520
+VE+P K+ R+ L K +RH L L D V
Sbjct: 496 QVENPCKAAREVLEKKQMKRHDYLYFILISDDV 528
>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 25.4 bits (53), Expect = 5.5
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +1
Query: 295 PSSTQETTTKRQIRRRRPNHSYTST 369
P ++ +RRRP+H++TST
Sbjct: 263 PQDFGNASSSTSAKRRRPDHNHTST 287
>SPBC19G7.10c |||topoisomerase associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 744
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +2
Query: 5 EEKRKTLSKRHLLIIECVYVQVLSD 79
+EKR+ L + H+L+ +C + SD
Sbjct: 297 DEKRQKLERDHMLMAQCAGLMTRSD 321
>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 608
Score = 24.6 bits (51), Expect = 9.6
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = +1
Query: 202 DLKTKQVHSRLEVQDYKHPVYKPESSTELTIPSSTQETTTKRQIRRRRPNH 354
D + S LE YKP SS++++ S +++ T I + P H
Sbjct: 383 DATQAALSSSLETPSVLTSSYKPSSSSKVSAKSVSRKPTGAPAIPKLPPKH 433
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 24.6 bits (51), Expect = 9.6
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 220 VHSRLEVQDYKHPVYKPESS 279
+HS L Y HP +KP +S
Sbjct: 362 IHSTLRFSIYTHPDFKPPAS 381
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 24.6 bits (51), Expect = 9.6
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Frame = +1
Query: 223 HSRLEVQDYKHPVY--KPESSTELTIPSSTQETTTKRQIRRRRPNHSY 360
H E +D P +PES+ P S+ + K + + RP SY
Sbjct: 749 HRETEEEDEGPPPQPARPESTRPALAPPSSSHSNDKYDVIQERPKISY 796
>SPBC713.10 |tim16||TIM23 translocase complex subunit
Tim16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 128
Score = 24.6 bits (51), Expect = 9.6
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 422 EVEDPLKSQRKNLNHKLNRRHQQLEIHLTQDI 517
E+ DP K L K+ R H++L+ L Q I
Sbjct: 85 EINDPKKGGSFYLQSKVFRAHEKLKSELDQKI 116
>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pombe|chr
3|||Manual
Length = 983
Score = 24.6 bits (51), Expect = 9.6
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 247 YKHPVYKPESSTELTIPSSTQETTTKRQIRRRRPNHSYTSTSSDISV 387
YK+ Y S+ + +++E T ++Q+ + P HS S S ISV
Sbjct: 906 YKNDDY---SAVGFYLDETSEEMTRRKQLLLKDPVHSVNSRSFFISV 949
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.126 0.355
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,945,125
Number of Sequences: 5004
Number of extensions: 35718
Number of successful extensions: 106
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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