Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_K04
         (545 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0171 - 21308993-21309671,21309768-21309862,21309944-213100...    31   0.60 
08_01_1010 - 10215625-10216335,10216372-10216473                       30   1.0  
01_06_0785 - 31985455-31988463                                         28   5.6  
05_07_0027 + 27140626-27141457,27143101-27143901,27144838-271448...    27   7.4  
03_02_0679 + 10350238-10350693                                         27   9.8  

>09_06_0171 -
           21308993-21309671,21309768-21309862,21309944-21310084,
           21310177-21310348,21310445-21310548,21311254-21311370
          Length = 435

 Score = 31.1 bits (67), Expect = 0.60
 Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
 Frame = +1

Query: 25  VQTTPSY-NRVRIRPGVIRQYHQASTESSRVKLERKRPAVTYRPAFDXXXXXXXXXXXXA 201
           V+TT S  + V+I P      +    +  R  ++ K  A   R A +            A
Sbjct: 192 VKTTMSAAHAVQINPSNYSSGYADEYDDERT-MQFKDAASAARAAAESANRAASAAKAAA 250

Query: 202 DLKTKQVHSRLEVQDYKHPVYKPESSTELTIPSSTQETTTKRQI 333
           DL  K+ HS  EV+D +   ++   S++    S++  ++ K  I
Sbjct: 251 DLVNKKTHSSDEVEDRRTSFHESSHSSKRQSMSNSSRSSRKEDI 294


>08_01_1010 - 10215625-10216335,10216372-10216473
          Length = 270

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +1

Query: 256 PVYKPESSTELTIPSSTQETTTKRQIRRRRPNHSYTSTSSDISVTRRPYEV 408
           P Y P +     +PS   E+ T    RRRR +H Y    S I+ + R  +V
Sbjct: 205 PEYSPSTPPPSPVPSDA-ESGTSPLWRRRRRHHPYQRRGSSIACSPRAVQV 254


>01_06_0785 - 31985455-31988463
          Length = 1002

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +1

Query: 238 VQDYKHPVYKPESSTELTIPSSTQETTTKRQIRRRRPNHSYTSTSSDISVTR-RPYEVKN 414
           +  +  P     S+T   +  STQ+   KRQ    R + S   T+S  SV R R ++V  
Sbjct: 117 ISTFSDPCQGSSSATSTGV-RSTQKEKHKRQWGLYRKSSSSQPTTSATSVNRLRSFDVYI 175

Query: 415 RFRGRR 432
            F GR+
Sbjct: 176 GFHGRK 181


>05_07_0027 +
           27140626-27141457,27143101-27143901,27144838-27144873,
           27145133-27145420,27145836-27146289,27146520-27146964
          Length = 951

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 195 YFLYTHCSSTSIKCGSI 145
           YF YT+C+  S +CGS+
Sbjct: 312 YFRYTNCTPASYQCGSL 328


>03_02_0679 + 10350238-10350693
          Length = 151

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 432 SSTSKPVLYFVRSARYRNIGRCRCIRVI 349
           S T + +L+F+    Y   G CR IRVI
Sbjct: 56  SCTGEILLFFINGEAYLGPGCCRAIRVI 83


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.314    0.126    0.355 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,800,805
Number of Sequences: 37544
Number of extensions: 206630
Number of successful extensions: 379
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)