Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_K04
         (545 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC020238-1|AAH20238.1|  596|Homo sapiens SRP68 protein protein.        29   8.0  
AK074698-1|BAC11145.1|  627|Homo sapiens protein ( Homo sapiens ...    29   8.0  
AF195951-1|AAF24308.1|  619|Homo sapiens signal recognition part...    29   8.0  

>BC020238-1|AAH20238.1|  596|Homo sapiens SRP68 protein protein.
          Length = 596

 Score = 29.5 bits (63), Expect = 8.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 449 RKNLNHKLNRRHQQLEIHLTQDIVTDRDYL 538
           RK LN K+  RH+     +T++++TD  YL
Sbjct: 95  RKTLNFKMGNRHKFTGKKVTEELLTDNRYL 124


>AK074698-1|BAC11145.1|  627|Homo sapiens protein ( Homo sapiens
           cDNA FLJ90217 fis, clone MAMMA1002234, highly similar to
           SIGNAL RECOGNITION PARTICLE 68 KD PROTEIN. ).
          Length = 627

 Score = 29.5 bits (63), Expect = 8.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 449 RKNLNHKLNRRHQQLEIHLTQDIVTDRDYL 538
           RK LN K+  RH+     +T++++TD  YL
Sbjct: 95  RKTLNFKMGNRHKFTGKKVTEELLTDNRYL 124


>AF195951-1|AAF24308.1|  619|Homo sapiens signal recognition
           particle 68 protein.
          Length = 619

 Score = 29.5 bits (63), Expect = 8.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 449 RKNLNHKLNRRHQQLEIHLTQDIVTDRDYL 538
           RK LN K+  RH+     +T++++TD  YL
Sbjct: 87  RKTLNFKMGNRHKFTGKKVTEELLTDNRYL 116


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.314    0.126    0.355 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,976,800
Number of Sequences: 237096
Number of extensions: 1167740
Number of successful extensions: 2210
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2210
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5364536570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)