Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_K04
(545 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73424-3|CAA97781.2| 1150|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z77669-5|CAK12563.1| 976|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z77669-4|CAB01242.1| 988|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z81465-2|CAB03861.1| 1642|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z48638-8|CAA88568.1| 237|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z75542-6|CAA99864.3| 552|Caenorhabditis elegans Hypothetical pr... 27 8.8
Z75538-3|CAA99842.3| 552|Caenorhabditis elegans Hypothetical pr... 27 8.8
U58734-5|AAB52504.3| 870|Caenorhabditis elegans Hypothetical pr... 27 8.8
U28971-4|AAK68668.1| 628|Caenorhabditis elegans Hypothetical pr... 27 8.8
AF098501-1|AAC67404.2| 548|Caenorhabditis elegans Hypothetical ... 27 8.8
>Z73424-3|CAA97781.2| 1150|Caenorhabditis elegans Hypothetical
protein C44B9.4 protein.
Length = 1150
Score = 29.1 bits (62), Expect = 2.2
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Frame = +1
Query: 205 LKTKQVHSRLEVQDYKHPVYKP-ESSTEL--TI--PSSTQETTTKRQIRRRRPNHSYTST 369
+KT+Q + EV D + Y P E+ST T+ P T TT R +++ N + ++
Sbjct: 307 IKTEQFRMKSEVFDSEEMYYDPEEASTSFMQTVIKPRQTSRKTTGRSASKKKSNGRFFAS 366
Query: 370 SSD 378
S D
Sbjct: 367 SWD 369
>Z77669-5|CAK12563.1| 976|Caenorhabditis elegans Hypothetical
protein T07F10.1b protein.
Length = 976
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/53 (24%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = +1
Query: 235 EVQDYKHPVYKPE---SSTELTIPSSTQETTTKRQIRRRRPNHSYTSTSSDIS 384
E++ P KPE S++EL +P+S + + ++ P + YT+ ++++
Sbjct: 52 EIESENVPAAKPEDNISASELRLPTSVSPISYQLTVKTYLPGYGYTADKNNLT 104
>Z77669-4|CAB01242.1| 988|Caenorhabditis elegans Hypothetical
protein T07F10.1a protein.
Length = 988
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/53 (24%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = +1
Query: 235 EVQDYKHPVYKPE---SSTELTIPSSTQETTTKRQIRRRRPNHSYTSTSSDIS 384
E++ P KPE S++EL +P+S + + ++ P + YT+ ++++
Sbjct: 64 EIESENVPAAKPEDNISASELRLPTSVSPISYQLTVKTYLPGYGYTADKNNLT 116
>Z81465-2|CAB03861.1| 1642|Caenorhabditis elegans Hypothetical protein
C09F9.2 protein.
Length = 1642
Score = 27.9 bits (59), Expect = 5.0
Identities = 20/52 (38%), Positives = 27/52 (51%)
Frame = +1
Query: 274 SSTELTIPSSTQETTTKRQIRRRRPNHSYTSTSSDISVTRRPYEVKNRFRGR 429
+ST+ TI SS TTTK + HSYT ++S RR Y ++ R R
Sbjct: 1306 TSTKKTISSSG--TTTKVLMPPMHTKHSYTVYEPEVSAKRR-YGLRVRILNR 1354
>Z48638-8|CAA88568.1| 237|Caenorhabditis elegans Hypothetical
protein ZK892.6 protein.
Length = 237
Score = 27.5 bits (58), Expect = 6.7
Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Frame = +1
Query: 49 RVRIRPGVIRQYHQASTESSRVKLERKRPAVTYRPAFDXXXXXXXXXXXXADLKTKQV-- 222
RV +R I+++ + +S+ + R R ++ A + + K Q+
Sbjct: 153 RVCVRKDTIQEFQLCTMDSTLLSCPRLRKKYMFKGAGNNMDMACLCIITLSVEKLHQLCN 212
Query: 223 ----HSRLEVQDYKHPVYKPESST 282
H +QD HP++K SST
Sbjct: 213 LNINHQESHLQDVTHPIFKKRSST 236
>Z75542-6|CAA99864.3| 552|Caenorhabditis elegans Hypothetical
protein F55D12.5 protein.
Length = 552
Score = 27.1 bits (57), Expect = 8.8
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +1
Query: 256 PVYKPESSTELTIPSSTQETTTKRQIRRRRPNHSYTSTSSDISVT 390
P K ++T T+PS+T TTT Q R P + T+T++ + T
Sbjct: 306 PAPKTTTTTTTTVPSTTTITTTTTQ--RTTPYTTTTTTTAAPTTT 348
>Z75538-3|CAA99842.3| 552|Caenorhabditis elegans Hypothetical
protein F55D12.5 protein.
Length = 552
Score = 27.1 bits (57), Expect = 8.8
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +1
Query: 256 PVYKPESSTELTIPSSTQETTTKRQIRRRRPNHSYTSTSSDISVT 390
P K ++T T+PS+T TTT Q R P + T+T++ + T
Sbjct: 306 PAPKTTTTTTTTVPSTTTITTTTTQ--RTTPYTTTTTTTAAPTTT 348
>U58734-5|AAB52504.3| 870|Caenorhabditis elegans Hypothetical
protein T27A10.6 protein.
Length = 870
Score = 27.1 bits (57), Expect = 8.8
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +1
Query: 265 KPESSTELTIPSSTQETTTKRQIRRRRPNHSYTSTSSDISVTRR 396
+P ++TE ++ + T T +IRR RP T+T+++ TR+
Sbjct: 508 RPTTTTEEPTTTTEESTKTTPRIRRTRPT---TTTTTEEPTTRK 548
>U28971-4|AAK68668.1| 628|Caenorhabditis elegans Hypothetical
protein B0244.10 protein.
Length = 628
Score = 27.1 bits (57), Expect = 8.8
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = -3
Query: 201 SFYFLYTHCSSTSIKCGSISN 139
SF ++Y +C++T+ +CG I N
Sbjct: 13 SFEYIYENCTNTTNQCGLIRN 33
>AF098501-1|AAC67404.2| 548|Caenorhabditis elegans Hypothetical
protein H28G03.2a protein.
Length = 548
Score = 27.1 bits (57), Expect = 8.8
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +1
Query: 211 TKQVHSRLEVQD-YKHPVYKPESSTELTIP 297
T++VHSR D K +PE S ELT P
Sbjct: 205 TREVHSRKRRHDDKKRSTVRPEVSKELTFP 234
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.314 0.126 0.355
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,602,689
Number of Sequences: 27780
Number of extensions: 193346
Number of successful extensions: 490
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
- SilkBase 1999-2023 -