Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_K03
         (527 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    29   0.57 
SPAC4F10.17 |||conserved fungal protein|Schizosaccharomyces pomb...    28   0.75 
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi...    28   0.75 
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      27   2.3  
SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    27   2.3  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    26   4.0  
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr...    26   4.0  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    25   7.0  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    25   7.0  

>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1220

 Score = 28.7 bits (61), Expect = 0.57
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +3

Query: 156 TANKAVADGKKVIDTTKDTLSTTADNTKKAAESAVNTAKDTINTTVDTTKKAAEDV 323
           TA+  V+   +V+DT   T++TT  +      + + +A DT+  TV+  +  A  V
Sbjct: 201 TASGTVSGTVEVVDTAAGTVTTTIYSGTTPFNTTLASATDTVPGTVEVVEPEAGTV 256



 Score = 28.7 bits (61), Expect = 0.57
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +3

Query: 156 TANKAVADGKKVIDTTKDTLSTTADNTKKAAESAVNTAKDTINTTVDTTKKAAEDV 323
           TA+  V+   +V+DT   T++TT  +      + + +A DT+  TV+  +  A  V
Sbjct: 273 TASGTVSGTVEVVDTAAGTVTTTIYSGTTPFNTTLASATDTVPGTVEVVEPEAGTV 328



 Score = 28.7 bits (61), Expect = 0.57
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +3

Query: 156 TANKAVADGKKVIDTTKDTLSTTADNTKKAAESAVNTAKDTINTTVDTTKKAAEDV 323
           TA+  V+   +V+DT   T++TT  +      + + +A DT+  TV+  +  A  V
Sbjct: 345 TASGTVSGTVEVVDTAAGTVTTTIYSGTTPFNTTLASATDTVPGTVEVVEPEAGTV 400



 Score = 28.7 bits (61), Expect = 0.57
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +3

Query: 156 TANKAVADGKKVIDTTKDTLSTTADNTKKAAESAVNTAKDTINTTVDTTKKAAEDV 323
           TA+  V+   +V+DT   T++TT  +      + + +A DT+  TV+  +  A  V
Sbjct: 417 TASGTVSGTVEVVDTAAGTVTTTIYSGTTPFNTTLASATDTVPGTVEVVEPEAGTV 472



 Score = 28.7 bits (61), Expect = 0.57
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +3

Query: 156 TANKAVADGKKVIDTTKDTLSTTADNTKKAAESAVNTAKDTINTTVDTTKKAAEDV 323
           TA+  V+   +V+DT   T++TT  +      + + +A DT+  TV+  +  A  V
Sbjct: 489 TASGTVSGTVEVVDTAAGTVTTTIYSGTTPFNTTLASATDTVPGTVEVVEPEAGTV 544



 Score = 28.7 bits (61), Expect = 0.57
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +3

Query: 156 TANKAVADGKKVIDTTKDTLSTTADNTKKAAESAVNTAKDTINTTVDTTKKAAEDV 323
           TA+  V+   +V+DT   T++TT  +      + + +A DT+  TV+  +  A  V
Sbjct: 561 TASGTVSGTVEVVDTAAGTVTTTIYSGTTPFNTTLASATDTVPGTVEVVEPEAGTV 616


>SPAC4F10.17 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 123

 Score = 28.3 bits (60), Expect = 0.75
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +3

Query: 156 TANKAVADGKKVIDTTKD-TLSTTADNTKKAAESAVNTAKDT 278
           T  KA     K ID  KD +    A+N K++ +     AKDT
Sbjct: 40  TVKKATGKASKKIDENKDKSPQEMAENAKQSVKQTAKDAKDT 81


>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 28.3 bits (60), Expect = 0.75
 Identities = 17/80 (21%), Positives = 41/80 (51%)
 Frame = +3

Query: 90  SAIDALDKELSKVSLAAGEAVDTANKAVADGKKVIDTTKDTLSTTADNTKKAAESAVNTA 269
           S+ D+  +  SK S ++  + D+ + + +D     D+  ++ S  +D+T  +++S  +++
Sbjct: 257 SSSDSESESSSKDSDSSSNSSDSEDDSSSDSS---DSESESSSEDSDSTSSSSDSDSSSS 313

Query: 270 KDTINTTVDTTKKAAEDVKS 329
            +  N+  DTT       +S
Sbjct: 314 SEDGNSNTDTTTSGEVSAQS 333


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 14/62 (22%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
 Frame = +3

Query: 144 EAVDTANKAVADGKKVIDTTKDTLSTTADNTKKAAESAVNTAKDTINTTV-DTTKKAAED 320
           E  DT++   +    V+D++K T+S+ + +++K  E+  +     + + V D   KA+++
Sbjct: 718 EEADTSSNFSSSNNHVLDSSKHTVSSASTSSRKFIENYKSLESIGLTSFVKDNKLKASKE 777

Query: 321 VK 326
           ++
Sbjct: 778 LQ 779


>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 204 KDTLSTTADNTKKAAESAVNTAKDTINTTVDTTKK 308
           + ++ TTA +TK++  +   + KD  N T D  K+
Sbjct: 169 RGSVGTTATHTKRSKNAPKTSPKDASNETADQEKE 203


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
 Frame = +3

Query: 132 LAAGEAVDTANKAVADGKKVIDTTKDTLSTTADNTKKAAESAVNTAKDTINTT---VDTT 302
           ++A EA D+ N++  +        +   +   DNT   ++ A +  + T NTT   VD T
Sbjct: 752 ISAIEAYDSQNESSQENA-TYTVVESNGNANGDNTATNSQGATDNGQTTTNTTQNNVDNT 810

Query: 303 KKAAEDVKS 329
           +   ++ ++
Sbjct: 811 QATTDNTQA 819


>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 111 KELSKVSLAAGEAVDTANKAVADGKKVIDTTKDTLS 218
           KE+ ++S+  GE+VD  N    D + + D   + LS
Sbjct: 115 KEIERLSVILGESVDEVNFVNGDFEDISDIKLEQLS 150


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 16/75 (21%), Positives = 33/75 (44%)
 Frame = +3

Query: 90  SAIDALDKELSKVSLAAGEAVDTANKAVADGKKVIDTTKDTLSTTADNTKKAAESAVNTA 269
           SA  +   +++  + A+     + ++A       I  T  TLS+ A ++        +T 
Sbjct: 227 SAYTSSSVDIAASTTASSTLPVSTSEATVSFSTDIPATPSTLSSPASSSSSYLVETSSTL 286

Query: 270 KDTINTTVDTTKKAA 314
            D++ TTV  T  ++
Sbjct: 287 TDSVFTTVTATSDSS 301


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -3

Query: 105 ERLLLSAWHRRLYWQLQ*QTSRP 37
           E+L L  WH++ +W L+ + + P
Sbjct: 110 EKLDLEEWHQKFWWSLRKKRNLP 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,272,416
Number of Sequences: 5004
Number of extensions: 19142
Number of successful extensions: 86
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)