Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_K03
         (527 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_1000 + 21604164-21605387,21605467-21605817                       36   0.020
07_01_0414 + 3157096-3157674                                           32   0.25 
11_01_0766 - 6432455-6433342                                           32   0.33 
03_02_0841 - 11669707-11670468                                         32   0.33 
11_01_0768 - 6442332-6443792                                           31   0.43 
12_02_1262 + 27415191-27415279,27415367-27415565,27415635-274157...    31   0.76 
05_06_0256 + 26720919-26720978,26721071-26721457,26721669-26721824     31   0.76 
01_06_0422 - 29226526-29226672,29226771-29227211,29227325-29227384     31   0.76 
06_01_0410 + 2928382-2930973                                           29   1.7  
07_03_0478 + 18556773-18556883,18557219-18557318,18557807-185595...    28   4.0  
07_03_0255 + 15866422-15866434,15867907-15868659,15868728-15868909     28   5.3  
04_04_1112 + 30984925-30985101,30985204-30985851                       27   7.1  
03_04_0016 + 16461542-16461566,16462701-16462732,16463015-164631...    27   7.1  
12_01_0901 - 8736190-8736240,8736426-8736821                           27   9.3  
08_02_1323 - 26136015-26137876,26138300-26139229,26139922-261400...    27   9.3  
05_07_0286 - 28988294-28988383,28988486-28989007,28989117-289897...    27   9.3  

>04_03_1000 + 21604164-21605387,21605467-21605817
          Length = 524

 Score = 35.9 bits (79), Expect = 0.020
 Identities = 18/66 (27%), Positives = 33/66 (50%)
 Frame = +3

Query: 123 KVSLAAGEAVDTANKAVADGKKVIDTTKDTLSTTADNTKKAAESAVNTAKDTINTTVDTT 302
           KVS AAG+A + A+       + +   KD +S  A + +++A      AKD ++   +  
Sbjct: 186 KVSEAAGKAKERASHVQHGAAETVRNAKDKVSHAARHARESARERAMDAKDRVSDVAERA 245

Query: 303 KKAAED 320
           ++  ED
Sbjct: 246 EQCTED 251



 Score = 28.3 bits (60), Expect = 4.0
 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
 Frame = +3

Query: 87  HSAIDALDKELSKVSLAAGEAVDTANKAVADGK-KVIDTTKDTLSTTADNTKKAAESAVN 263
           H A + +     KVS AA  A ++A +   D K +V D  +     T D   +AA+ A  
Sbjct: 203 HGAAETVRNAKDKVSHAARHARESARERAMDAKDRVSDVAERAEQCTEDAAGRAAQKAAR 262

Query: 264 TAKDTINTTVDTTKKAAEDV 323
            A++ +            D+
Sbjct: 263 -AEEAVKAKAGEAASNLSDI 281


>07_01_0414 + 3157096-3157674
          Length = 192

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +3

Query: 144 EAVDTANKAVADGKKVIDTTKDTLSTTADNTKKAAESAVNTAKDTINTTVDTTKK 308
           +A   A+KA   G+K +D      ++ AD  K+  E   +++  +  TT+D  K+
Sbjct: 128 DAAIAADKAKEGGEKKLDAVAQEAASAADEKKQQVEEKSSSSSSSPTTTIDERKE 182


>11_01_0766 - 6432455-6433342
          Length = 295

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 25/61 (40%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
 Frame = +3

Query: 123 KVSLAAGEAVDTANKAVADGKKVIDTTKDTLSTTADNTKKAAESA---VNTAKDTINTTV 293
           + S AAG   DTA  A A G      T     +TAD T  AA SA   V+TA     TT 
Sbjct: 236 ETSAAAGSTADTATSAAA-GSTSAKETSPVAGSTADKTYAAAGSAPPVVDTAPAPPVTTY 294

Query: 294 D 296
           D
Sbjct: 295 D 295


>03_02_0841 - 11669707-11670468
          Length = 253

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +3

Query: 126 VSLAAGEAVDTANKAVADGKKVIDT-TKDTLSTTADNTKKAAESAVNTAKDTINTTVDTT 302
           V+  A +A +     + + K  +   T+D   TTA    +  +    TA++T + T DT 
Sbjct: 163 VAQKASDASEATKNKLGEYKDALARKTRDAKDTTAQKATEFKDGVKATAQETRDATADTA 222

Query: 303 KKAAEDVK 326
           +KA +  K
Sbjct: 223 RKAKDATK 230


>11_01_0768 - 6442332-6443792
          Length = 486

 Score = 31.5 bits (68), Expect = 0.43
 Identities = 24/66 (36%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
 Frame = +3

Query: 123 KVSLAAGEAVDTANKAVADGKKVIDTTKDTLSTTADNTKKAA--ESAVNTAKDTINTTVD 296
           + SLAA    DTA  AVA G      T      TAD    AA   +A         +TVD
Sbjct: 355 ETSLAAEPTADTATSAVA-GSTADKETSPAAEPTADTATSAAAGSTADKETSPAAESTVD 413

Query: 297 TTKKAA 314
           T   AA
Sbjct: 414 TATSAA 419


>12_02_1262 +
           27415191-27415279,27415367-27415565,27415635-27415775,
           27415939-27416003,27416111-27416489,27416688-27417149,
           27417226-27417546,27418184-27418501
          Length = 657

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -3

Query: 138 LQEILSRVPCRERLLLSAWHRRL-YWQLQ*QTSRPLR*AHRLSSPS 4
           L+ ++SRVP      L  WH R   W L  +  +P+  A R++ PS
Sbjct: 442 LESVVSRVPYLHLRSLPTWHSRTSSWSLCLKVPQPILAADRIAKPS 487


>05_06_0256 + 26720919-26720978,26721071-26721457,26721669-26721824
          Length = 200

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 18/65 (27%), Positives = 26/65 (40%)
 Frame = +3

Query: 138 AGEAVDTANKAVADGKKVIDTTKDTLSTTADNTKKAAESAVNTAKDTINTTVDTTKKAAE 317
           A EA D A++A          TK+     A   K+ A      AKD  ++T    +  A 
Sbjct: 34  ASEAKDRASEAAGHAAGKGQDTKEATKEKAQAAKERASETAQAAKDKTSSTSQAARDKAA 93

Query: 318 DVKSQ 332
           + K Q
Sbjct: 94  ESKDQ 98


>01_06_0422 - 29226526-29226672,29226771-29227211,29227325-29227384
          Length = 215

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 20/80 (25%), Positives = 30/80 (37%)
 Frame = +3

Query: 93  AIDALDKELSKVSLAAGEAVDTANKAVADGKKVIDTTKDTLSTTADNTKKAAESAVNTAK 272
           A +  D    K   A   A D   +A+  G+     T+D      D     A+SA + A+
Sbjct: 63  AYETKDATKEKAYEAKDAASDATGRAMDKGRGAAGATRDKAYDAKDRAADTAQSAADRAR 122

Query: 273 DTINTTVDTTKKAAEDVKSQ 332
           D    T     + AE  K +
Sbjct: 123 DGAGQTGSYIGQTAEAAKQK 142



 Score = 30.3 bits (65), Expect = 1.0
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
 Frame = +3

Query: 138 AGEAVDTAN----KAVADGKKVIDTTKDTLSTTADNTKKAAESAVNTAKDTINTTVDTTK 305
           A EA DTA+    +A+  G    + TK+    T D TK+ A  A + A D     +D  +
Sbjct: 34  AREAKDTASDAAGRAMGRGHGAKEATKEKAYETKDATKEKAYEAKDAASDATGRAMDKGR 93

Query: 306 KAA 314
            AA
Sbjct: 94  GAA 96



 Score = 29.1 bits (62), Expect = 2.3
 Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
 Frame = +3

Query: 135 AAGEAVDTANKAVADGKKVIDTTKDTLSTTADNTKKAAESAVNTAKDTINTTVDTT---- 302
           A   A DTA  A    +     T   +  TA+  K+ A  A   AK+T     D T    
Sbjct: 106 AKDRAADTAQSAADRARDGAGQTGSYIGQTAEAAKQKAAGAAQYAKETAIAGKDKTGAVL 165

Query: 303 KKAAEDVKS 329
           ++A E VKS
Sbjct: 166 QQAGEQVKS 174



 Score = 28.7 bits (61), Expect = 3.1
 Identities = 20/66 (30%), Positives = 25/66 (37%)
 Frame = +3

Query: 135 AAGEAVDTANKAVADGKKVIDTTKDTLSTTADNTKKAAESAVNTAKDTINTTVDTTKKAA 314
           AAG A+   + A    K+    TKD     A   K AA  A   A D        T+  A
Sbjct: 44  AAGRAMGRGHGAKEATKEKAYETKDATKEKAYEAKDAASDATGRAMDKGRGAAGATRDKA 103

Query: 315 EDVKSQ 332
            D K +
Sbjct: 104 YDAKDR 109


>06_01_0410 + 2928382-2930973
          Length = 863

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = +3

Query: 90  SAIDALDKELS--KVSLAAGEAVDTANKAVADGKKVIDTTKDTLSTTADNTKKAAESAVN 263
           S  +A++ E S  KV   AG+A+      +    +    TK  LS   D+T+  AE + N
Sbjct: 202 SLTEAMEAEASMDKVVENAGKAIQDLCTRIDRILEAFHDTKVDLSENKDSTRDVAELSAN 261

Query: 264 TAKDTI 281
           T+  TI
Sbjct: 262 TSPTTI 267


>07_03_0478 +
           18556773-18556883,18557219-18557318,18557807-18559513,
           18559709-18560094,18560175-18560246,18560366-18560455
          Length = 821

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +3

Query: 201 TKDTLSTTADNTKKAAESAVNTAKDTINTTVDTTKKAAEDVKSQ 332
           T + L T    TK+A     N   +T+NT V TT+   +    Q
Sbjct: 727 TPNVLDTLKKKTKRAYNKRRNAMANTLNTAVTTTESITDATNVQ 770


>07_03_0255 + 15866422-15866434,15867907-15868659,15868728-15868909
          Length = 315

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +3

Query: 111 KELSKVSLAAGEAVDTANKAVADGKKVIDTTKDTLSTTADNT-KKAAESAVNTAKDTINT 287
           K  SK     G   D   K    G +VIDT+ +  ++T++NT +K     +NT  D   +
Sbjct: 151 KTASKGEAKTGTGNDVTEKT---GVRVIDTSAEVKNSTSENTNQKDGVPTLNTPMDKKLS 207

Query: 288 TVDTTKK 308
             D  K+
Sbjct: 208 GADAFKQ 214


>04_04_1112 + 30984925-30985101,30985204-30985851
          Length = 274

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +3

Query: 138 AGEAVD-TANKAVADGKKVIDTTKDTLSTTADNTKKAAESAVNTAKDTINTTVDTTKKAA 314
           AGEA D T       G+KV + TK+  S   +  +   E A   A+         TK+AA
Sbjct: 178 AGEAKDRTVEGTKHAGEKVAEMTKEGASKVVETAQAIGEKAKQAAQGAWG----ATKEAA 233

Query: 315 EDVK 326
           + VK
Sbjct: 234 QGVK 237


>03_04_0016 +
           16461542-16461566,16462701-16462732,16463015-16463100,
           16463189-16463305,16463399-16463474,16463695-16463818,
           16464482-16464595,16464700-16464947
          Length = 273

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +3

Query: 174 ADGKKV-IDTTKDTLSTTADNTKKAAESAVNTAKDTINTTVDTTKKAAED 320
           A+G+ V +++T  ++S TAD    AA+   +   D      +  KKAAE+
Sbjct: 91  AEGEGVKVESTACSVSPTADQKAPAADEEDDDDVDLFGEETEEEKKAAEE 140


>12_01_0901 - 8736190-8736240,8736426-8736821
          Length = 148

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 55  LKLPIQPPMPSTQQ*TLSTRNSRKYLLQRVRLW 153
           L++P+ PP PST+Q  L  R +R        LW
Sbjct: 81  LQVPLSPPPPSTRQQQLPPRPARPLGYHHGVLW 113


>08_02_1323 - 26136015-26137876,26138300-26139229,26139922-26140068,
            26140139-26140360,26140513-26140555
          Length = 1067

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/71 (18%), Positives = 37/71 (52%)
 Frame = +3

Query: 108  DKELSKVSLAAGEAVDTANKAVADGKKVIDTTKDTLSTTADNTKKAAESAVNTAKDTINT 287
            ++EL  V     +  +   + +AD + ++++ K+ +S  +  ++KAAE+  +    T + 
Sbjct: 947  EEELETVGTVVDDPKEEDKEEIADKEVIVNSDKNHVSLKSLLSEKAAETKESKKPSTKDR 1006

Query: 288  TVDTTKKAAED 320
             +   ++ ++D
Sbjct: 1007 VLSFRRRVSKD 1017


>05_07_0286 -
           28988294-28988383,28988486-28989007,28989117-28989758,
           28990554-28990597,28990836-28991016
          Length = 492

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -3

Query: 153 PQPHPLQEILSRVPCRERLLLSAW-HRRLYWQLQ*QT 46
           P P P   +LSR   R R  + AW HRR +  L  QT
Sbjct: 30  PPPRPSGRVLSRRARRRRSSVLAWRHRRCFGGLILQT 66


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,671,048
Number of Sequences: 37544
Number of extensions: 134946
Number of successful extensions: 527
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)