Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_K03
         (527 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               28   0.051
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   1.5  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   3.4  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   3.4  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 28.3 bits (60), Expect = 0.051
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 93  AIDALDKELSKVSLAAGEAVDTANKAVADGKKVIDTTKD-TLSTTADNTK 239
           A++A  K LSKV     + +DT    +A   +++D T   TL  TAD  K
Sbjct: 350 ALEAEKKNLSKVIDQHSQLIDTLENVLAIVDRLMDETNQLTLQETADAFK 399


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -1

Query: 176 SDGFVRSIHSLTRCKRYFREFLVESV 99
           + GF   +HS   CK +FR  + + +
Sbjct: 74  ASGFHYGVHSCEGCKGFFRRSIQQKI 99


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +2

Query: 281 QYYG*YNKEGCRG 319
           ++YG Y+ EGC+G
Sbjct: 120 KHYGVYSCEGCKG 132


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +2

Query: 281 QYYG*YNKEGCRG 319
           ++YG Y+ EGC+G
Sbjct: 120 KHYGVYSCEGCKG 132


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,351
Number of Sequences: 438
Number of extensions: 1428
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)