Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_J24
         (335 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    25   4.1  
SPBC13E7.04 |atp16||F1-ATPase delta subunit |Schizosaccharomyces...    25   4.1  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    24   5.4  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    24   7.1  
SPCC18.06c |caf1|pop2|CCR4-Not complex subunit Caf1|Schizosaccha...    24   7.1  
SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe...    23   9.4  
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    23   9.4  

>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +3

Query: 171 VLSSQ*SSHYQYNFHVPSLGTRVPP 245
           ++SS  SS Y  + HVPS+GTR  P
Sbjct: 47  IVSSSASSSYPIS-HVPSVGTRGIP 70


>SPBC13E7.04 |atp16||F1-ATPase delta subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 160

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -3

Query: 279 NSYSQPVLRTPLGVRGFPVRVREN 208
           + + Q ++R P G+RG+   V++N
Sbjct: 5   SQFPQGLVRAPFGIRGYAQAVQKN 28


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1217

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = -2

Query: 163 YEHYYNVLCLRYFSRNCYFVITGLCNFNKINLIIDLL 53
           +E   N   +++++ +  + ITG+ + NK  L  D+L
Sbjct: 519 FEQRQNQFIVKHYAGDVTYSITGMTDKNKDQLATDIL 555


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 318 HSVSDKLPTVMY*NSYSQPVLRTPLGVRGF 229
           H +  K+  +   +SY +P+L + LGV GF
Sbjct: 516 HLLQRKVSRLFLDSSYYKPILDSLLGVFGF 545


>SPCC18.06c |caf1|pop2|CCR4-Not complex subunit
           Caf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 163 YEHYYNVLCLRYFSRN 116
           YE +Y +LC+ YF +N
Sbjct: 188 YEEFYKILCI-YFPKN 202


>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 248

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -3

Query: 207 YIGNGWITEKIKLTFMNIITMYYVCDIFLGIV 112
           Y  +G     + +T +N   M+Y+  IF+G++
Sbjct: 18  YFQDGASPSYLGVTHLNDYLMFYLTFIFIGVI 49


>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 259 HGLGIAVLVHDGGQLVANTM 318
           HG G A+ +  GG L+ NT+
Sbjct: 479 HGHGDAIALQYGGSLLVNTL 498


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,342,345
Number of Sequences: 5004
Number of extensions: 26004
Number of successful extensions: 50
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)