Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_J24
         (335 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK127869-1|BAC87169.1| 1533|Homo sapiens protein ( Homo sapiens ...    31   0.88 
BC104025-1|AAI04026.1|  347|Homo sapiens TTLL9 protein protein.        28   8.2  
BC104024-1|AAI04025.1|  230|Homo sapiens TTLL9 protein protein.        28   8.2  
AL031658-2|CAI42577.1|  234|Homo sapiens tubulin tyrosine ligase...    28   8.2  

>AK127869-1|BAC87169.1| 1533|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45972 fis, clone PLACE7018304. ).
          Length = 1533

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = -3

Query: 225 VRVRENYIGN--GWITEKIKLTFM-NIITMYYVCDIFLGI 115
           +R+R +  GN  GW  ++I +T M N IT Y+ C  +L +
Sbjct: 811 IRIRHDNTGNRAGWFLDRIDITDMNNEITYYFPCQRWLAV 850


>BC104025-1|AAI04026.1|  347|Homo sapiens TTLL9 protein protein.
          Length = 347

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
 Frame = -2

Query: 253 HTPGGTRVPSEGT*KLYW---*WLDH*EDKTYIYEH 155
           H PG   V  EG    YW    WL    D TY+ EH
Sbjct: 10  HRPGWVEVKDEGEWDFYWCDVSWLRENFDHTYMDEH 45


>BC104024-1|AAI04025.1|  230|Homo sapiens TTLL9 protein protein.
          Length = 230

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
 Frame = -2

Query: 253 HTPGGTRVPSEGT*KLYW---*WLDH*EDKTYIYEH 155
           H PG   V  EG    YW    WL    D TY+ EH
Sbjct: 10  HRPGWVEVKDEGEWDFYWCDVSWLRENFDHTYMDEH 45


>AL031658-2|CAI42577.1|  234|Homo sapiens tubulin tyrosine
           ligase-like family, member 9 protein.
          Length = 234

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
 Frame = -2

Query: 253 HTPGGTRVPSEGT*KLYW---*WLDH*EDKTYIYEH 155
           H PG   V  EG    YW    WL    D TY+ EH
Sbjct: 22  HRPGWVEVKDEGEWDFYWCDVSWLRENFDHTYMDEH 57


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,558,673
Number of Sequences: 237096
Number of extensions: 977963
Number of successful extensions: 1745
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1745
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1794632842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)