Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_J24
         (335 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024793-1|AAF60692.2|  649|Caenorhabditis elegans Atm (ataxia t...    33   0.067
U23521-6|AAC46812.1|  469|Caenorhabditis elegans Hypothetical pr...    27   3.3  
Z75545-4|CAD01087.1|  108|Caenorhabditis elegans Hypothetical pr...    26   7.7  

>AC024793-1|AAF60692.2|  649|Caenorhabditis elegans Atm (ataxia
           telangectasia mutated)family protein 1 protein.
          Length = 649

 Score = 32.7 bits (71), Expect = 0.067
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = +3

Query: 45  LKHNKSIIRLILLKLHNPVITK*QFLEKYRRHNT 146
           +KH K II  +LLKLH+  I +   LE+YR   T
Sbjct: 1   MKHYKKIIHQVLLKLHSVCIGQLSKLEEYRETRT 34


>U23521-6|AAC46812.1|  469|Caenorhabditis elegans Hypothetical
           protein F41C3.5 protein.
          Length = 469

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -3

Query: 243 GVRGFPVRVRENYIGNGWITEKIKL 169
           G + FP+ ++   +GNG++ EK+ +
Sbjct: 178 GQKDFPINLKGMALGNGYVNEKLNI 202


>Z75545-4|CAD01087.1|  108|Caenorhabditis elegans Hypothetical
           protein K10D3.6 protein.
          Length = 108

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 151 YNVLCLRYFSRNCYFVITGLCNFNKINLIIDLLCFK 44
           Y +LCL   +R+    I G+C+F+ I +  D+  F+
Sbjct: 51  YPILCLFTVTRSYDLDIQGICSFDWIPISSDIESFE 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,432,326
Number of Sequences: 27780
Number of extensions: 148129
Number of successful extensions: 318
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 318
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)