Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_J24
         (335 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   1.7  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   1.7  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   1.7  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   1.7  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   2.3  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   3.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   3.0  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   4.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   5.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   5.3  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    20   7.0  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            20   7.0  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    20   9.2  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    20   9.2  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 1.7
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = -1

Query: 323 NSIVLATSCPPS-CTRTAIPNPCYA 252
           N IV  T+C P+ CT T   N C A
Sbjct: 422 NEIVTCTNCGPNPCTHTT-TNGCTA 445


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 1.7
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = -1

Query: 323 NSIVLATSCPPS-CTRTAIPNPCYA 252
           N IV  T+C P+ CT T   N C A
Sbjct: 408 NEIVTCTNCGPNPCTHTT-TNGCTA 431


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 1.7
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = -1

Query: 323 NSIVLATSCPPS-CTRTAIPNPCYA 252
           N IV  T+C P+ CT T   N C A
Sbjct: 442 NEIVTCTNCGPNPCTHTT-TNGCTA 465


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 1.7
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = -1

Query: 323 NSIVLATSCPPS-CTRTAIPNPCYA 252
           N IV  T+C P+ CT T   N C A
Sbjct: 391 NEIVTCTNCGPNPCTHTT-TNGCTA 414


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 219 PSLGTRVPPGVCVT 260
           P  G  +PPGVC T
Sbjct: 360 PLHGNLLPPGVCYT 373


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +1

Query: 202 NIIFTYPHWEPAYPQGC 252
           NI+   P W+   PQ C
Sbjct: 23  NILMFLPSWDGKMPQPC 39


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 7/26 (26%), Positives = 13/26 (50%)
 Frame = -3

Query: 198 NGWITEKIKLTFMNIITMYYVCDIFL 121
           +GW    +  +   I+   +VC +FL
Sbjct: 654 SGWAIGAMSFSATGILITLFVCGVFL 679


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.0 bits (42), Expect = 4.0
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = +2

Query: 188 IQPLPI*FSRTLTGNPRTPRGVRNT 262
           + PLP     T++  P+ PR +  +
Sbjct: 42  VDPLPFGVENTISSVPQPPRSLEGS 66


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.6 bits (41), Expect = 5.3
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -1

Query: 305 TSCPPSCTRTAIPNP 261
           T+CPP+      PNP
Sbjct: 211 TACPPTLACPLNPNP 225


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 5.3
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +1

Query: 184 SDPAITNIIFTYPHWEPAYPQGCA 255
           SD A    I   P ++PA   GC+
Sbjct: 873 SDSAQGRAILKIPSYKPASTPGCS 896


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +1

Query: 172 FYLLSDPAITNIIFTYPHWE 231
           F+L +D + +  +  YP+WE
Sbjct: 80  FFLKNDESESPKLNPYPNWE 99


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -3

Query: 219 VRENYIGNGWITE 181
           + +N   NGWI E
Sbjct: 369 IHDNICSNGWICE 381


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 6/14 (42%), Positives = 8/14 (57%)
 Frame = -1

Query: 278 TAIPNPCYAHPWGY 237
           T +PN CY   + Y
Sbjct: 93  TVLPNSCYQERYEY 106


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 6/14 (42%), Positives = 8/14 (57%)
 Frame = -1

Query: 278 TAIPNPCYAHPWGY 237
           T +PN CY   + Y
Sbjct: 93  TVLPNSCYQERYEY 106


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,987
Number of Sequences: 438
Number of extensions: 2238
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7591023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)