Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_J23
(601 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0532 - 3935661-3935720,3936314-3936412,3937804-3937908,393... 30 1.2
07_03_1549 - 27633229-27633340,27633418-27633509,27633601-276342... 30 1.6
01_01_0762 + 5889925-5890136,5891110-5891273,5891755-5891878,589... 29 2.2
08_01_0621 - 5426210-5427787 28 5.0
04_03_0036 - 9950353-9950379,9950753-9950791,9951021-9951194,995... 28 5.0
01_06_0019 + 25620966-25621580 28 5.0
11_01_0329 + 2471015-2471075,2471152-2471432 28 6.6
10_08_0978 + 21994359-21996961,21997089-21998229 28 6.6
03_05_0541 + 25381403-25382077,25382555-25383904,25386267-253864... 28 6.6
03_05_0001 - 19386264-19386284,19386446-19386517,19386614-193873... 28 6.6
03_02_0644 + 10118790-10119559,10120252-10120432,10120526-101207... 28 6.6
07_01_0860 - 7142913-7144895 27 8.7
03_05_0007 - 19536239-19536532,19536937-19537047,19537126-195376... 27 8.7
02_05_0372 + 28370589-28371857 27 8.7
01_06_0021 - 25634648-25634976,25635084-25635237,25635405-256356... 27 8.7
01_01_0115 - 856957-858055,858479-858538,858802-859583 27 8.7
>07_01_0532 -
3935661-3935720,3936314-3936412,3937804-3937908,
3939474-3939666,3940434-3940513,3940607-3940904,
3941139-3941431
Length = 375
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +1
Query: 43 RETSDSLYPSGIWDQMKINQAGNLSRAVSSAIPAYYSDRTPII 171
R+TS +++ W Q + L+RA++ A+PA S+ +PII
Sbjct: 284 RKTSRAIHSVPTWHQFLVGAEARLARAMAQALPAARSN-SPII 325
>07_03_1549 -
27633229-27633340,27633418-27633509,27633601-27634270,
27634731-27634870,27634958-27635299
Length = 451
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = -2
Query: 171 YDR--RSITVISRYGRTDRPRQISCLIYFHLIP-NTRRI*RVRSFSGIVST 28
YDR ++ IS +G R + C+ +FH+IP +T I ++ F ST
Sbjct: 341 YDRLNEELSTISGFGPFTRANVLMCMGFFHMIPADTETIRHLKQFHKRAST 391
>01_01_0762 +
5889925-5890136,5891110-5891273,5891755-5891878,
5891941-5892073,5892629-5892732,5892867-5895780,
5895876-5895965,5896251-5896355,5896633-5896740,
5896826-5896876
Length = 1334
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 25 GSGDYARETSDSLYPSGIWDQMKINQAGNLSRAVSS 132
G+G +R SD Y WD M+ ++ GN R S
Sbjct: 172 GAGACSRRHSDPSYFKKAWDMMRADKTGNFQREKKS 207
>08_01_0621 - 5426210-5427787
Length = 525
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/43 (41%), Positives = 21/43 (48%)
Frame = -1
Query: 364 LVVERAAHVAIREEFAHRPQANHSLLGMNYQLIPPCWSPVARV 236
LV RAA IRE F H +A H G PP W+PV +
Sbjct: 330 LVRRRAADSDIREVFTHAYRARHR--GAR-PSPPPAWAPVTDI 369
>04_03_0036 -
9950353-9950379,9950753-9950791,9951021-9951194,
9951287-9951415,9951782-9952012,9952655-9952732,
9953035-9953055,9953790-9953855,9953935-9954015,
9954148-9954920,9955461-9955654,9956723-9956817,
9958190-9958219,9958334-9958453,9959185-9959262,
9959428-9959505,9960459-9960488,9960614-9960739,
9961239-9961379,9963416-9963532,9963619-9963670,
9963759-9963890,9964668-9964720,9964816-9964911,
9965255-9965260,9965416-9965561,9966494-9966629,
9966885-9967038,9968017-9968154,9968268-9968614
Length = 1295
Score = 28.3 bits (60), Expect = 5.0
Identities = 9/26 (34%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -1
Query: 307 QANHSLLGM-NYQLIPPCWSPVARVI 233
Q+N+ L G +Q++P CW+P+ +
Sbjct: 543 QSNYELYGKPRFQILPQCWNPLVAAV 568
>01_06_0019 + 25620966-25621580
Length = 204
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 422 WKPSSVDGLVIVRTRFNAETGGRTGGA 342
W+P+ DG V + + GRTGGA
Sbjct: 106 WRPAGADGAVRAERKQDRREPGRTGGA 132
>11_01_0329 + 2471015-2471075,2471152-2471432
Length = 113
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +1
Query: 262 AVSADSSYPTDYGLPVGGARTLRVWQRAPP 351
AV+AD YP DYG G W + P
Sbjct: 30 AVAADYGYPADYGYAAGSKLGPENWGKLSP 59
>10_08_0978 + 21994359-21996961,21997089-21998229
Length = 1247
Score = 27.9 bits (59), Expect = 6.6
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Frame = +1
Query: 247 PATNMAVSADS----SYPTDYGLPVGGAR--TLRVWQRAPPVLPPVSALKRVLTITRP 402
PAT A++ S+ GL G R +R + R+P + PPVS VLT+ P
Sbjct: 991 PATREAITLPDGHGHSHTAGLGLDPGTGRYKVVRSFYRSPSMDPPVSMGMEVLTVGEP 1048
>03_05_0541 +
25381403-25382077,25382555-25383904,25386267-25386402,
25386642-25387126
Length = 881
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +1
Query: 295 YGLPVGGARTLRVWQRAPPVLPPVSALKRVLTITRPSTEDGFQD 426
+G+P G L + PP+ PP+ VL + T DG D
Sbjct: 180 FGIPRNGGMLLAIEPPPPPISPPMPQTS-VLQVVPHYTRDGIGD 222
>03_05_0001 - 19386264-19386284,19386446-19386517,19386614-19387357,
19387454-19388884,19388953-19389118,19392035-19392114,
19392393-19392462,19392550-19392761,19392837-19392890,
19393471-19393623,19393715-19393930,19394029-19394248,
19394332-19394399,19394510-19394643,19394755-19394854,
19394943-19395421,19395506-19395699,19396270-19396355,
19396364-19396444,19396842-19397023,19397305-19397346,
19398247-19398558,19399374-19399434,19399435-19399617,
19399744-19399863,19400380-19401051,19402597-19402668,
19402742-19402865,19403563-19403651,19405023-19405097
Length = 2170
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +2
Query: 353 FYHQSLR*NVSSLSLGRLQRMASKMAVLQMFKIKQKIVTYLMDNRKKCKFI 505
FYHQ+ + + Q+M S M + F + I + L D K CK +
Sbjct: 2103 FYHQTQESVLQPIGQSAQQQMDSGMNLNHFFSSPEAIQSLLSDRDKLCKLL 2153
>03_02_0644 +
10118790-10119559,10120252-10120432,10120526-10120725,
10120834-10120992,10122375-10122741
Length = 558
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +1
Query: 244 LPATNMAVSADSSYPTDYGLPVGGARTLRVWQRAPPVLPPVSALKRV 384
LP TN S D TD+ L G L+ ++R P L ++AL +
Sbjct: 454 LPITNRTTSLDVG--TDWRLYAGAQEVLQTFRRVPVHLVDITALSEL 498
>07_01_0860 - 7142913-7144895
Length = 660
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +1
Query: 301 LPVGGARTLRVWQRAPPVL 357
+P G A T+ VW RAPP L
Sbjct: 193 VPCGMAATVAVWSRAPPPL 211
>03_05_0007 -
19536239-19536532,19536937-19537047,19537126-19537690,
19537737-19537822
Length = 351
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +1
Query: 13 GTRPGSGDYARETSDSLYPSGIWDQMKINQAGNLSRAVSSAIPAYYS 153
GT+P GD A E + G K N G LS ++ ++P +S
Sbjct: 148 GTQPSGGDGAAECATGSSRRGGDAGAKTNAGGRLSSSLRRSLPCAFS 194
>02_05_0372 + 28370589-28371857
Length = 422
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -2
Query: 177 IFYDRRSITV-ISRYGRTDRPRQISCLIYFHLIPN 76
+ YDRRSI + YGRT P + L F L PN
Sbjct: 27 VTYDRRSIEEWLFVYGRTTCPATMQPLSNFDLTPN 61
>01_06_0021 -
25634648-25634976,25635084-25635237,25635405-25635605,
25636876-25636913,25638166-25638438,25640701-25640932
Length = 408
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 288 NRLWFACGRCANSSRMATCAARSTTSLCVKTCP 386
N+LWFA G+ A + + A AAR V CP
Sbjct: 247 NKLWFALGKTA-AEKTAWRAARGRDLKLVTVCP 278
>01_01_0115 - 856957-858055,858479-858538,858802-859583
Length = 646
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 10 SGTRPGSGDYARETSDSLYPSGIWDQMKINQAG 108
+G R S YA ++ + +PS ++DQ+ Q G
Sbjct: 528 AGGRRNSDMYAENSNQTYFPSWVYDQLTEQQVG 560
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,557,627
Number of Sequences: 37544
Number of extensions: 362227
Number of successful extensions: 1013
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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