Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_J23
         (601 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    24   1.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    24   1.3  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    24   1.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.3  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   5.3  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   9.2  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   9.2  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -2

Query: 96  YFHLIPNTRRI*RVRSFSGIVSTSRACATASC 1
           YFH+   +    R+     I  + R   TASC
Sbjct: 107 YFHIATTSNEFIRIHHSGSITRSIRLTITASC 138


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -2

Query: 96  YFHLIPNTRRI*RVRSFSGIVSTSRACATASC 1
           YFH+   +    R+     I  + R   TASC
Sbjct: 107 YFHIATTSNEFIRIHHSGSITRSIRLTITASC 138


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -2

Query: 96  YFHLIPNTRRI*RVRSFSGIVSTSRACATASC 1
           YFH+   +    R+     I  + R   TASC
Sbjct: 46  YFHIATTSNEFIRIHHSGSITRSIRLTITASC 77


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 7    GSGTRPGSGDYARETSDSL 63
            G GTRP  G Y     DSL
Sbjct: 1030 GKGTRPKRGKYRNYDRDSL 1048


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -3

Query: 425 SWKPSSVDGL 396
           SWKPS  DG+
Sbjct: 105 SWKPSDFDGI 114


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 382 HVLTQRLVVERAAHVAIREEFAHRPQ 305
           HVL + LV+ R    + R ++  RPQ
Sbjct: 347 HVLPRLLVMRRYNTPSKRSDYDSRPQ 372


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -2

Query: 423 LEAILCRRPSDSED 382
           LEA+LCRR ++ ++
Sbjct: 21  LEALLCRRDAEIQE 34


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,038
Number of Sequences: 438
Number of extensions: 3591
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)