Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_J21
(441 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo... 31 0.10
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 27 1.3
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha... 26 2.2
SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33 |Schizo... 26 3.0
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce... 25 5.2
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce... 25 5.2
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c... 25 5.2
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 25 6.8
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 25 6.8
SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces po... 25 6.8
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 24 9.0
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 24 9.0
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 24 9.0
SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyc... 24 9.0
>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 437
Score = 30.7 bits (66), Expect = 0.10
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +2
Query: 11 GGNLAHVVGFDESSVLMLGDKK--RTKESEALRATLELPSDSCIDFVQTVDGLVFSSTNY 184
GG L V G S +LGD+K R K S A+ + +P +F + ++G+ +S +
Sbjct: 168 GGQLEQVKGITYSLDALLGDEKLARLKRSHAIPSPDHIPHIRQEEFAK-LNGIHYSLQDL 226
Query: 185 LKLDGGKRKQFLQTAA 232
+ D G+R ++ A+
Sbjct: 227 MGHDHGERPSHVKDAS 242
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 27.1 bits (57), Expect = 1.3
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -3
Query: 412 RCHHRYDRWPLHSFRHLLSS 353
RC RYDR L+S++ LLSS
Sbjct: 855 RCMRRYDRIRLNSYKLLLSS 874
>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 380
Score = 26.2 bits (55), Expect = 2.2
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +2
Query: 50 SVLMLGDKKRTKESEALRATLELPSDSCIDFVQTVDGLVFSSTN 181
++L DK++ E + LR + + + +QT++ + F ST+
Sbjct: 59 NILSNDDKRKWHEKDYLRNQYSVQIEDVLQHLQTIEKIPFESTS 102
>SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 25.8 bits (54), Expect = 3.0
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = -3
Query: 283 CAFQH*LFPRHLLHDSVRCSLQELLSLA---SV*FQVVRRRKYETVDR 149
C FQ FP HLL + +R S +E S A S + R +K T+ +
Sbjct: 224 CLFQVRPFPNHLLINWIRASEEEKASSADRLSSALHISRDKKLTTISK 271
>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1112
Score = 25.0 bits (52), Expect = 5.2
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +3
Query: 81 LKNQKRSEQR*NSHLTPALISFRRSTVSYFXXXXXXXXXEARESSSCRLQRTL 239
LKNQKRSE+R +T +I + + F EA S L+ L
Sbjct: 738 LKNQKRSEKRDADEVTQVMIKECQELLRLFGLPYIVAPQEAEAQCSKLLELKL 790
>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 747
Score = 25.0 bits (52), Expect = 5.2
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 155 DGLVFSSTNYLKLDGGKRKQFLQTAAHAIMQKMTREQLVLECTCTYV 295
D + S+ N L L+ G KQFL+ AA ++ + T +YV
Sbjct: 672 DAFIESAKNILILEMGSDKQFLRRAAVQLLDSCKHLPDSVITTLSYV 718
>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1111
Score = 25.0 bits (52), Expect = 5.2
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +1
Query: 376 NEEAIDHICDDICYYYIFKIRA 441
++EA+ +C + Y+Y F IRA
Sbjct: 674 SDEALARLCREFQYFYPFDIRA 695
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 24.6 bits (51), Expect = 6.8
Identities = 28/96 (29%), Positives = 36/96 (37%), Gaps = 4/96 (4%)
Frame = -1
Query: 354 LRATSFLSFVKQAERTRNGSTYVHVHSSTSCSLVIFCMIACAAVCRNCFLLPPSS-FK*F 178
L A+ FL F A N H SL FC ++ + L+PP F
Sbjct: 91 LNASCFLGFCVLAHDYVNLINARHFMIEHFLSLFAFCRTILFSLLTSFLLVPPPQFFHSE 150
Query: 177 VDENTRPSTV*TKSMQESDGSSNVA---LSASDSLV 79
E PS S+ S S VA L+AS +V
Sbjct: 151 AGERPTPSVGAPSSLASSMDSVRVAPSMLAASHQIV 186
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 24.6 bits (51), Expect = 6.8
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +2
Query: 74 KRTKESEALRATLELPSDSCIDFVQTV-DGLVFSSTNYLKLDGGKR-KQFLQTAAHAIMQ 247
K+T + + L + E + I ++ + D L S+ L+L ++ K LQT +Q
Sbjct: 134 KQTAQLQNLLSDKEKEVEKKITIIKDLKDALASSTHQVLELQHTQQEKASLQTNYEFELQ 193
Query: 248 KMTREQLVLECTCTYV 295
K+T++ +LE T++
Sbjct: 194 KLTQKNSILENNNTWL 209
>SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 24.6 bits (51), Expect = 6.8
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 175 DELLETRRRQEKAVPADCSARYHAEDDEG 261
DE++E +R ++VP S ED+EG
Sbjct: 205 DEVIEDNKRLWESVPFAVSGGVSEEDEEG 233
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 24.2 bits (50), Expect = 9.0
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -1
Query: 141 KSMQESDGSSNVALSASDSLVLFLSPSIRTDDSSN 37
++MQE S ++ L L LS + +DS N
Sbjct: 307 ENMQELSNSDDICAEKESRLKLVLSEKAKLEDSKN 341
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 24.2 bits (50), Expect = 9.0
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Frame = -3
Query: 406 HHRYDRWPLHSFRHLL-SSASNFFPLFREASRANAEWIHVCTCAFQH*LFPRHLLHDSVR 230
H + + LH ++ ++S+ ++A+ + E I V T +FQ L H+++
Sbjct: 677 HIMQENFSLHKALEVMRETSSDLDKQLKDATASQKELI-VQTSSFQKELVEERERHNAIS 735
Query: 229 CSLQELLSLASV*FQVVRRRKYETVDRLNEIN 134
LQE+ SL +V + + VD+ IN
Sbjct: 736 KRLQEIESLYRDRELLVTNLEDQLVDQTVTIN 767
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 24.2 bits (50), Expect = 9.0
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 276 NAHVHTWIHSAFALLASRKRGKKLLADES 362
+A H WI S FAL + R KK+ D+S
Sbjct: 1571 SASYHVWISSLFALECN--RFKKMSQDQS 1597
>SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 383
Score = 24.2 bits (50), Expect = 9.0
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -2
Query: 71 YHPASGQMIHRIRRHAQGFHR 9
+HPA + R+RR+ GF R
Sbjct: 236 HHPADVEEARRLRRYNMGFSR 256
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,657,367
Number of Sequences: 5004
Number of extensions: 30198
Number of successful extensions: 95
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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