Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_J21
(441 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0307 + 17546263-17546299,17546522-17548018,17548859-175489... 29 1.7
02_01_0521 + 3768072-3768239,3768280-3768337,3769197-3769659,376... 28 2.9
01_03_0200 + 13744735-13745037,13745071-13745610,13745704-137458... 28 2.9
03_06_0445 - 33982018-33982965,33984308-33984463 28 3.8
11_02_0020 + 7429898-7430131,7432565-7432669,7434535-7434621,743... 27 5.1
02_04_0546 - 23782400-23782599,23782744-23782830,23782923-237834... 27 5.1
03_02_0138 + 5837813-5838490,5839000-5839164,5839289-5839426,583... 27 6.7
04_04_0645 + 26913947-26915783,26915833-26916308,26916372-26917220 27 8.8
04_04_0534 + 26071227-26071811 27 8.8
03_05_0936 - 28955486-28955683,28956320-28956424,28956550-289566... 27 8.8
03_02_0330 + 7502593-7504956,7505020-7506312,7522011-7522235 27 8.8
02_03_0116 - 15440263-15441024,15441097-15443451 27 8.8
>02_03_0307 +
17546263-17546299,17546522-17548018,17548859-17548949,
17549054-17549621,17550591-17550670,17550993-17551077,
17551172-17551263,17551355-17551423,17551587-17551655,
17552217-17552510,17552761-17552797,17552883-17552972,
17553520-17553585,17553704-17553818,17553902-17553940,
17554519-17554700
Length = 1136
Score = 29.1 bits (62), Expect = 1.7
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = +2
Query: 53 VLMLGDKKRTKESEALRATLELPSDSCIDFVQTVDGLVFSSTNYLKL 193
V+ GDK +ES +T+ LPS C D V + ST L L
Sbjct: 198 VIECGDKVAQQESSTQESTVSLPSSECGDKVAQQESSTQESTVSLPL 244
>02_01_0521 +
3768072-3768239,3768280-3768337,3769197-3769659,
3769736-3769990,3770763-3770934,3772260-3772910,
3773659-3774045,3774123-3774155,3774239-3774307,
3774388-3774463,3775135-3775223,3775442-3775615,
3775693-3775821
Length = 907
Score = 28.3 bits (60), Expect = 2.9
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = -3
Query: 355 SASNFFPLFREASRANAEWIHVCTCA--FQH*LFPRHLLHDSVRCSLQELLSLA 200
S ++FFP F + R ++W+ T Q+ LF H L D+V C E LA
Sbjct: 577 SYAHFFPDFNRSPRITSDWLRPSTFEGDLQYILF-FHKLMDTVECGNTEDTVLA 629
>01_03_0200 +
13744735-13745037,13745071-13745610,13745704-13745862,
13748992-13749123,13749282-13749472,13749541-13749792,
13750248-13750323,13750411-13750602,13750688-13750689,
13753230-13753287,13753736-13754941
Length = 1036
Score = 28.3 bits (60), Expect = 2.9
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +2
Query: 11 GGNLAHVVGFDESSVLMLGDKKRT-KESEALRATLELPSDSCIDFVQTVDGLVFSSTNYL 187
GG+LA++V VL D+ K EAL+ +E D ++F+ V L+F L
Sbjct: 769 GGDLANLV--HPGDVLHTTDELTDRKRREALQKAMEGKLDESLEFLAGVTALLFLGLEGL 826
Query: 188 KLDG 199
L+G
Sbjct: 827 ALEG 830
>03_06_0445 - 33982018-33982965,33984308-33984463
Length = 367
Score = 27.9 bits (59), Expect = 3.8
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +2
Query: 83 KESEALRATLELP-SDSCIDFVQTVDGLVFSSTNYLKLDGGKRKQFLQTAAHAIMQKMTR 259
K ++A + P +D C+D ++ + GL ++ + GKR ++L H+ +Q M
Sbjct: 14 KAADAAAGADDSPEADRCLDAMRRLRGLRVTTDVLVSTQVGKRLRYLTKHPHSDIQSMAT 73
Query: 260 EQL 268
+ L
Sbjct: 74 DLL 76
>11_02_0020 +
7429898-7430131,7432565-7432669,7434535-7434621,
7435188-7435241,7435338-7435483,7435593-7435719,
7436200-7436208
Length = 253
Score = 27.5 bits (58), Expect = 5.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 215 FLQTAAHAIMQKMTREQLVLECTCTYVDP 301
+L+ +A+A +TREQL + TC V P
Sbjct: 151 YLEESAYASQVLLTREQLERQYTCNEVQP 179
>02_04_0546 -
23782400-23782599,23782744-23782830,23782923-23783442,
23783801-23784000,23784457-23784561,23784923-23785020,
23785168-23785271
Length = 437
Score = 27.5 bits (58), Expect = 5.1
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +1
Query: 160 SRIFVDELLE---TRRRQEKAVPADCSARYHAEDDEGTTSAGMHMYIRGSIPRSL 315
+R+F+ LLE + + + V A+CS+ +E +TS G H ++ S + +
Sbjct: 298 ARVFMQNLLEVPCSENKSDSQVAANCSSEDIDPANESSTSNGNHSDVQESCHKDI 352
>03_02_0138 +
5837813-5838490,5839000-5839164,5839289-5839426,
5839496-5839647,5839754-5839862,5840551-5840649,
5840739-5840804,5840891-5840998,5841820-5841906
Length = 533
Score = 27.1 bits (57), Expect = 6.7
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = +1
Query: 223 DCSARYHAEDDEGTTSAGMHMYIRGSIPRSLCLLHEREE 339
D +RY ED G HM +G+ R+ L E E
Sbjct: 128 DAGSRYETEDSAGVAHFVEHMLFKGTGDRNAAQLEEEIE 166
>04_04_0645 +
26913947-26915783,26915833-26916308,26916372-26917220
Length = 1053
Score = 26.6 bits (56), Expect = 8.8
Identities = 14/23 (60%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = -1
Query: 72 LSPSIRTDDSS-NPTTCARFPPP 7
LSPS DDS NP AR PPP
Sbjct: 10 LSPSASGDDSEQNPRRRARTPPP 32
>04_04_0534 + 26071227-26071811
Length = 194
Score = 26.6 bits (56), Expect = 8.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 270 CWNAHVHTWIHSAFALLASRKRGKK 344
C A W H+A A LA+R+RG++
Sbjct: 76 CAQAATVAWRHTAGARLATRRRGRR 100
>03_05_0936 -
28955486-28955683,28956320-28956424,28956550-28956693,
28957078-28957356,28957480-28957587,28958288-28958567,
28958724-28960029,28961301-28962342
Length = 1153
Score = 26.6 bits (56), Expect = 8.8
Identities = 15/65 (23%), Positives = 31/65 (47%)
Frame = +2
Query: 8 GGGNLAHVVGFDESSVLMLGDKKRTKESEALRATLELPSDSCIDFVQTVDGLVFSSTNYL 187
GG + + F+ES++ + G + +E+E R + ++F+ G++ +Y
Sbjct: 575 GGSSEGDIEYFNESNLSVSGKRNSQQETEKKRINAKGAKQEQLNFIDNQKGVLPPGASY- 633
Query: 188 KLDGG 202
DGG
Sbjct: 634 -ADGG 637
>03_02_0330 + 7502593-7504956,7505020-7506312,7522011-7522235
Length = 1293
Score = 26.6 bits (56), Expect = 8.8
Identities = 14/23 (60%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = -1
Query: 72 LSPSIRTDDSS-NPTTCARFPPP 7
LSPS DDS NP AR PPP
Sbjct: 10 LSPSASGDDSEQNPRRRARTPPP 32
>02_03_0116 - 15440263-15441024,15441097-15443451
Length = 1038
Score = 26.6 bits (56), Expect = 8.8
Identities = 14/23 (60%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = -1
Query: 72 LSPSIRTDDSS-NPTTCARFPPP 7
LSPS DDS NP AR PPP
Sbjct: 10 LSPSASGDDSEQNPRRRARTPPP 32
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,345,506
Number of Sequences: 37544
Number of extensions: 214976
Number of successful extensions: 680
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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