Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_J21
         (441 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    26   0.16 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   1.5  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    23   2.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   3.4  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   3.4  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   6.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.9  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 26.2 bits (55), Expect = 0.16
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -2

Query: 158 RRPSERNQCRSQM 120
           RRPS RN C SQM
Sbjct: 402 RRPSRRNSCESQM 414



 Score = 22.6 bits (46), Expect = 2.0
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = -1

Query: 264 CSLVIFCMIACAAVCRNC 211
           C L  F M    A CRNC
Sbjct: 469 CWLPFFTMYLVRAFCRNC 486


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 285 VHTWIHSAFALLASR 329
           +HTWIH    LL +R
Sbjct: 539 IHTWIHPWLPLLRNR 553


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = -1

Query: 264 CSLVIFCMIACAAVCRNC 211
           C L  F M    A CRNC
Sbjct: 21  CWLPFFTMYLVRAFCRNC 38


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 138 SMQESDGSSNVALSASDSLVLFLSPSIRT 52
           S+ +++      +S  D LVL+ +PSI T
Sbjct: 156 SISQANEGFCAVISMHDGLVLYTTPSICT 184


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 138 SMQESDGSSNVALSASDSLVLFLSPSIRT 52
           S+ +++      +S  D LVL+ +PSI T
Sbjct: 151 SISQANEGFCAVISMHDGLVLYTTPSICT 179


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 191 LDGGKRKQFLQTAAHAIMQKM 253
           L+ G+R  FL T  HA    M
Sbjct: 189 LESGERVTFLDTPGHAAFISM 209


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 12/40 (30%), Positives = 16/40 (40%)
 Frame = -1

Query: 126  SDGSSNVALSASDSLVLFLSPSIRTDDSSNPTTCARFPPP 7
            SD S  V +  ++        SIR DD    T    + PP
Sbjct: 961  SDPSDTVTIITAEEAPSGPPTSIRVDDLDQHTLKVTWKPP 1000


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,175
Number of Sequences: 438
Number of extensions: 2368
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11450997
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)