Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_J19
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   188   3e-49
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   188   4e-49
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    26   3.0  
SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr ...    26   3.9  
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc...    25   9.0  

>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  188 bits (459), Expect = 3e-49
 Identities = 89/134 (66%), Positives = 105/134 (78%)
 Frame = +3

Query: 39  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 218
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 219 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 398
           FPM QGVL   RVRLL+  GH CYRPRRDGERKRKSVRGCIV  +L+VLAL IV++G Q+
Sbjct: 61  FPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQD 120

Query: 399 IPGLTDGEVSPPSR 440
           IPGLTD  V+ P R
Sbjct: 121 IPGLTD--VTVPKR 132



 Score = 36.3 bits (80), Expect = 0.003
 Identities = 15/22 (68%), Positives = 18/22 (81%)
 Frame = +1

Query: 418 VKFPRRLGPKRASKIRKLFNFN 483
           V  P+RLGPKRASKIR+ FN +
Sbjct: 127 VTVPKRLGPKRASKIRRFFNLS 148



 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 443 PSVRLKSANYSILTQEDDVRRYVVKR 520
           P    K   +  L++EDDVR++V++R
Sbjct: 135 PKRASKIRRFFNLSKEDDVRQFVIRR 160


>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  188 bits (458), Expect = 4e-49
 Identities = 88/134 (65%), Positives = 105/134 (78%)
 Frame = +3

Query: 39  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 218
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 219 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 398
           FPM QGVL   RVRLL+  GH CYRPRRDGERKRKSVRGCIV  +L+VLAL I+++G Q+
Sbjct: 61  FPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQD 120

Query: 399 IPGLTDGEVSPPSR 440
           IPGLTD  V+ P R
Sbjct: 121 IPGLTD--VTVPKR 132



 Score = 36.3 bits (80), Expect = 0.003
 Identities = 15/22 (68%), Positives = 18/22 (81%)
 Frame = +1

Query: 418 VKFPRRLGPKRASKIRKLFNFN 483
           V  P+RLGPKRASKIR+ FN +
Sbjct: 127 VTVPKRLGPKRASKIRRFFNLS 148



 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 443 PSVRLKSANYSILTQEDDVRRYVVKR 520
           P    K   +  L++EDDVR++V++R
Sbjct: 135 PKRASKIRRFFNLSKEDDVRQFVIRR 160


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 283 EWPFDIKRRTRLLVRTPCFIGKPCLSLP 200
           EWP  +K   +LLVRT  +   PC + P
Sbjct: 26  EWPLLLKNFDKLLVRTGHYTPIPCGNNP 53


>SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 448

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 436 LGPKRASKIRKLFNFNTRRRCASLCC 513
           +GP  A  +R  FNF T   C SL C
Sbjct: 405 IGPLVAGFLRDQFNFITSIACLSLLC 430


>SPAC6B12.05c |||chromatin remodeling complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 295

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 261 LLMSKGHSCYRPRRDGERKRKSVRGCIVD 347
           ++ SK +S  +P+  G  KRK+ R  +VD
Sbjct: 97  VVTSKKNSRSKPKNGGASKRKASRRTVVD 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,052,106
Number of Sequences: 5004
Number of extensions: 39960
Number of successful extensions: 81
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)