Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_J19
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560...   175   2e-44
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706...   172   1e-43
11_04_0329 - 16442298-16443734                                         29   3.0  
03_02_0752 - 10922456-10922644,10922719-10922796,10922888-109230...    29   3.0  

>03_03_0207 -
           15455163-15455389,15455623-15455895,15455991-15456099,
           15456186-15456243,15457002-15457066,15457190-15457195
          Length = 245

 Score =  175 bits (425), Expect = 2e-44
 Identities = 81/130 (62%), Positives = 101/130 (77%), Gaps = 2/130 (1%)
 Frame = +3

Query: 39  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 218
           MK N++ P TGCQK  E+ D+ KLR FY+KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 219 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 392
           FPMKQGVLT+ RVRLL+ +G  C+R   RRDGER+RKSVRGCIV  +LSV+ LVIV+KG 
Sbjct: 61  FPMKQGVLTSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGD 120

Query: 393 QEIPGLTDGE 422
            ++PGLTD E
Sbjct: 121 NDLPGLTDTE 130



 Score = 34.3 bits (75), Expect = 0.060
 Identities = 15/17 (88%), Positives = 15/17 (88%)
 Frame = +1

Query: 427 PRRLGPKRASKIRKLFN 477
           PR  GPKRASKIRKLFN
Sbjct: 132 PRMRGPKRASKIRKLFN 148


>07_03_1309 +
           25669394-25669399,25669520-25669584,25670543-25670600,
           25670683-25670791,25670872-25671144,25671348-25671589
          Length = 250

 Score =  172 bits (419), Expect = 1e-43
 Identities = 80/130 (61%), Positives = 100/130 (76%), Gaps = 2/130 (1%)
 Frame = +3

Query: 39  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 218
           MK N++ P TGCQK  E+ D+ KLR F++KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 219 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 392
           FPMKQGVLT  RVRLL+ +G  C+R   RRDGER+RKSVRGCIV  +LSV+ LVIV+KG 
Sbjct: 61  FPMKQGVLTAGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGE 120

Query: 393 QEIPGLTDGE 422
            ++PGLTD E
Sbjct: 121 NDLPGLTDTE 130



 Score = 34.7 bits (76), Expect = 0.046
 Identities = 15/19 (78%), Positives = 16/19 (84%)
 Frame = +1

Query: 427 PRRLGPKRASKIRKLFNFN 483
           PR  GPKRASKIRKLFN +
Sbjct: 132 PRMRGPKRASKIRKLFNLS 150


>11_04_0329 - 16442298-16443734
          Length = 478

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -2

Query: 400 ISCAPLRTMTRAKTERLASTMQPRTDLRFLSPSRRG 293
           + CAP   M       LAS+  P + LRF S  RRG
Sbjct: 77  LPCAPNSFMLNITLRALASSPDPASALRFFSLLRRG 112


>03_02_0752 -
           10922456-10922644,10922719-10922796,10922888-10923016,
           10923105-10923152,10923243-10923333,10923517-10923648,
           10923869-10924086,10925121-10925271,10925360-10926009,
           10926715-10926786,10926938-10926985,10927105-10927242,
           10927750-10927756,10928064-10928212
          Length = 699

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 128 LFIEDTELVLIHHFK*LLTSRCRV*NVQLHDCDQSL 21
           LF++ T  V +  F  L   RC V + +LH C Q+L
Sbjct: 76  LFLDKTMDVALDSFDNLFCRRCLVFDCRLHGCSQNL 111


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,302,614
Number of Sequences: 37544
Number of extensions: 303494
Number of successful extensions: 753
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)